miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 31996 0.66 0.73594
Target:  5'- gGCGGcgCCGCG--CCGGGCCC-CGg- -3'
miRNA:   3'- gCGUCa-GGCGUugGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 7709 0.66 0.73594
Target:  5'- uGCuGcCCGCGGaccaCCGGGCCUUUuuUCg -3'
miRNA:   3'- gCGuCaGGCGUUg---GGCCCGGGAGu-AG- -5'
5204 5' -60.5 NC_001798.1 + 127959 0.66 0.73594
Target:  5'- gGCccGGcCCGCGuCCCcGGCCCUC-UCu -3'
miRNA:   3'- gCG--UCaGGCGUuGGGcCCGGGAGuAG- -5'
5204 5' -60.5 NC_001798.1 + 82022 0.66 0.726395
Target:  5'- cCGCGG-CCGCcGCCagacaacagCGGGuCCCUCGc- -3'
miRNA:   3'- -GCGUCaGGCGuUGG---------GCCC-GGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 135440 0.66 0.726395
Target:  5'- uGCGGUCUGCGGCggcaCCGGGgCUgCGUUc -3'
miRNA:   3'- gCGUCAGGCGUUG----GGCCCgGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 123453 0.66 0.726395
Target:  5'- gCGCGcGcCCcCGACCCGGGgCCCgaagccgaccUCGUCg -3'
miRNA:   3'- -GCGU-CaGGcGUUGGGCCC-GGG----------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 2449 0.66 0.726395
Target:  5'- gGCGGcgCCaGCcGCCCugcgggucgGGGCCCUCGg- -3'
miRNA:   3'- gCGUCa-GG-CGuUGGG---------CCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 36319 0.66 0.716773
Target:  5'- gCGCGGgCCGgGGCCgGGGCUcgCUgGUCc -3'
miRNA:   3'- -GCGUCaGGCgUUGGgCCCGG--GAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 82199 0.66 0.716773
Target:  5'- gGCAGUgCCGCcuucUCCGGGCCUUg--- -3'
miRNA:   3'- gCGUCA-GGCGuu--GGGCCCGGGAguag -5'
5204 5' -60.5 NC_001798.1 + 25379 0.66 0.716773
Target:  5'- cCGCg--CCGUGGCgCCcGGCCCUCAUg -3'
miRNA:   3'- -GCGucaGGCGUUG-GGcCCGGGAGUAg -5'
5204 5' -60.5 NC_001798.1 + 73968 0.66 0.716773
Target:  5'- gCGCGG-CCGCGGgcUCCGGGCCg-CcgCg -3'
miRNA:   3'- -GCGUCaGGCGUU--GGGCCCGGgaGuaG- -5'
5204 5' -60.5 NC_001798.1 + 47380 0.66 0.710967
Target:  5'- cCGCAGggagccacucCCGCGGCCCccguggguuacgcaGGCCCUCGc- -3'
miRNA:   3'- -GCGUCa---------GGCGUUGGGc-------------CCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 4711 0.66 0.710967
Target:  5'- aCGCcGUCCGCGgcaggcucgucgacgGCCUccccggacgccgGGGCCgcCUCGUCg -3'
miRNA:   3'- -GCGuCAGGCGU---------------UGGG------------CCCGG--GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 35279 0.66 0.707083
Target:  5'- aCGCGGg-CGgGGCUCGGGCUCUCc-- -3'
miRNA:   3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 93160 0.66 0.707083
Target:  5'- gGCGGgcgaCGCcGCCCuGGCCCUggagucCAUCg -3'
miRNA:   3'- gCGUCag--GCGuUGGGcCCGGGA------GUAG- -5'
5204 5' -60.5 NC_001798.1 + 153220 0.66 0.707083
Target:  5'- cCGC---CCGaCGGCCCGGGCCCgCGg- -3'
miRNA:   3'- -GCGucaGGC-GUUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 52864 0.66 0.697333
Target:  5'- aGCgAGUCCGUgcuggGGCCgCGGGUCCgcgCGUg -3'
miRNA:   3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5'
5204 5' -60.5 NC_001798.1 + 101733 0.66 0.687532
Target:  5'- -aCAGaUCgGCGGCCCGGGCCgU-GUCc -3'
miRNA:   3'- gcGUC-AGgCGUUGGGCCCGGgAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 150221 0.67 0.677687
Target:  5'- uGguG-CCGCGGgggacCCCGGGUCCUCc-- -3'
miRNA:   3'- gCguCaGGCGUU-----GGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 117394 0.67 0.677687
Target:  5'- gGCAccGUCCGCAACCCcguuacggacauGGGCaaCCUCc-- -3'
miRNA:   3'- gCGU--CAGGCGUUGGG------------CCCG--GGAGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.