miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 96662 0.66 0.567647
Target:  5'- --cCCCGagcGGCGCCACGgCCGcgcuGGAGCGc -3'
miRNA:   3'- cacGGGC---CCGCGGUGCgGGU----CUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 6372 0.66 0.567647
Target:  5'- -gGCCgGGGgGCCGggggGCCgGGggGCc -3'
miRNA:   3'- caCGGgCCCgCGGUg---CGGgUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 149657 0.66 0.567647
Target:  5'- -aGgCCGGGCGCCGgGUCgCGGGccccgGGCu -3'
miRNA:   3'- caCgGGCCCGCGGUgCGG-GUCU-----UCGu -5'
5205 5' -63.5 NC_001798.1 + 153229 0.66 0.567647
Target:  5'- -gGCCCGGGC-CCGCGgCggCGGAGGa- -3'
miRNA:   3'- caCGGGCCCGcGGUGCgG--GUCUUCgu -5'
5205 5' -63.5 NC_001798.1 + 34743 0.66 0.567647
Target:  5'- -gGCCCGGGaGCgggGCgGCCCGGGAGgGa -3'
miRNA:   3'- caCGGGCCCgCGg--UG-CGGGUCUUCgU- -5'
5205 5' -63.5 NC_001798.1 + 78759 0.66 0.567647
Target:  5'- cGUGCCCGcGGUuaucugGCuagagCACGCCCAGc-GCAc -3'
miRNA:   3'- -CACGGGC-CCG------CG-----GUGCGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 101794 0.66 0.567647
Target:  5'- -gGCCCGGccuccGCGCCggGCGCCuCGGGuuggGGUAa -3'
miRNA:   3'- caCGGGCC-----CGCGG--UGCGG-GUCU----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 103000 0.66 0.567647
Target:  5'- -cGCCgGGG-GCCcagguGCGCCCGGccAGCGc -3'
miRNA:   3'- caCGGgCCCgCGG-----UGCGGGUCu-UCGU- -5'
5205 5' -63.5 NC_001798.1 + 27876 0.66 0.557971
Target:  5'- -gGCuCCGGGCcuacGCCGaGCCCAGccGCc -3'
miRNA:   3'- caCG-GGCCCG----CGGUgCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 34804 0.66 0.557971
Target:  5'- -gGCCCGGG-GCCccggggcccccGCGCuccgCCGGggGCc -3'
miRNA:   3'- caCGGGCCCgCGG-----------UGCG----GGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 35414 0.66 0.557971
Target:  5'- aUGCCCgcGGGgGCCuaauGCGgCgGGAGGCGu -3'
miRNA:   3'- cACGGG--CCCgCGG----UGCgGgUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 111079 0.66 0.557971
Target:  5'- cGUGCUCGGGCGagACGgaccccCCCGGGgucaGGCGu -3'
miRNA:   3'- -CACGGGCCCGCggUGC------GGGUCU----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 132049 0.66 0.557971
Target:  5'- cGUGgucaUCGGGgaguaCGCCAUGCCCGGAuuuucGGCGc -3'
miRNA:   3'- -CACg---GGCCC-----GCGGUGCGGGUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 5963 0.66 0.557971
Target:  5'- -cGuCCCGGuCGCCGcCGCaCCAGggGaCAc -3'
miRNA:   3'- caC-GGGCCcGCGGU-GCG-GGUCuuC-GU- -5'
5205 5' -63.5 NC_001798.1 + 59464 0.66 0.552187
Target:  5'- cGUGCCCGGGCgcggugaggcguucgGCCACcacccguuGCCguCAG-GGCAa -3'
miRNA:   3'- -CACGGGCCCG---------------CGGUG--------CGG--GUCuUCGU- -5'
5205 5' -63.5 NC_001798.1 + 74393 0.66 0.548341
Target:  5'- -gGCCCGGGgGCCgugGCGCCggCGGAccugaccgccgcGGCc -3'
miRNA:   3'- caCGGGCCCgCGG---UGCGG--GUCU------------UCGu -5'
5205 5' -63.5 NC_001798.1 + 35002 0.66 0.548341
Target:  5'- -gGCCgGGGCgcaccucggcgGCCAagccccggccCGCCCGGggGUc -3'
miRNA:   3'- caCGGgCCCG-----------CGGU----------GCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 66738 0.66 0.548341
Target:  5'- cUGUCCagaaccGGCGCCACGUCCGccuGggGUg -3'
miRNA:   3'- cACGGGc-----CCGCGGUGCGGGU---CuuCGu -5'
5205 5' -63.5 NC_001798.1 + 85994 0.66 0.548341
Target:  5'- -cGCCgGGGCGCUgGCGCagGGggGUg -3'
miRNA:   3'- caCGGgCCCGCGG-UGCGggUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 70378 0.66 0.548341
Target:  5'- uUGCaCCGGGC-CCACGggcuUCCGGAgacGGCGc -3'
miRNA:   3'- cACG-GGCCCGcGGUGC----GGGUCU---UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.