miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 36645 0.66 0.738703
Target:  5'- gGggGCGCgcuuuccccGCGUC-GCCCCuCGGGuUCc -3'
miRNA:   3'- -CuuCGCG---------CGCAGuCGGGGcGUCCuAG- -5'
5206 3' -60.1 NC_001798.1 + 31345 0.66 0.738703
Target:  5'- gGggGCGCGCG-CAGgCgCgGCGGGugggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCgG-GgCGUCCua--G- -5'
5206 3' -60.1 NC_001798.1 + 147918 0.66 0.738703
Target:  5'- cAGGCGCGgGUCGGgCCCGUAc---- -3'
miRNA:   3'- cUUCGCGCgCAGUCgGGGCGUccuag -5'
5206 3' -60.1 NC_001798.1 + 21959 0.66 0.738703
Target:  5'- cGGAGCGCGgGaugacgCgGGCCCCggGCAGGGc- -3'
miRNA:   3'- -CUUCGCGCgCa-----G-UCGGGG--CGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 152089 0.66 0.738703
Target:  5'- uAAGCGgGCcggggGUCGGCCCCGUcaAGcGUCc -3'
miRNA:   3'- cUUCGCgCG-----CAGUCGGGGCG--UCcUAG- -5'
5206 3' -60.1 NC_001798.1 + 27609 0.66 0.729081
Target:  5'- gGggGCGCGCGgggCuGCCCUGCc----- -3'
miRNA:   3'- -CuuCGCGCGCa--GuCGGGGCGuccuag -5'
5206 3' -60.1 NC_001798.1 + 91112 0.66 0.729081
Target:  5'- -cGGUGCGCu---GCUCCGCGGGggCg -3'
miRNA:   3'- cuUCGCGCGcaguCGGGGCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 22515 0.66 0.729081
Target:  5'- cGGAGCGCGgcuaccgaCG-CGGCCgC-CAGGAUCu -3'
miRNA:   3'- -CUUCGCGC--------GCaGUCGGgGcGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 74040 0.66 0.726179
Target:  5'- -cGGCGCGCGgCGGCCUgcguugcguguuuuCGCGGGu-- -3'
miRNA:   3'- cuUCGCGCGCaGUCGGG--------------GCGUCCuag -5'
5206 3' -60.1 NC_001798.1 + 52305 0.66 0.726179
Target:  5'- gGAGGCGCuGUuUCGcGCCCUGCcccugggcagccccGGGGUCg -3'
miRNA:   3'- -CUUCGCG-CGcAGU-CGGGGCG--------------UCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 109220 0.66 0.720353
Target:  5'- -cGGaCGCGCGUCcgucccuguucuggcGCCUCGCGGGGc- -3'
miRNA:   3'- cuUC-GCGCGCAGu--------------CGGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 72571 0.66 0.71938
Target:  5'- cAAGCGCGCGcuggUCGcGuCCCuCGCGGGGc- -3'
miRNA:   3'- cUUCGCGCGC----AGU-C-GGG-GCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 76064 0.66 0.71938
Target:  5'- gGAGGaCGUGCGgaucCAGgCCCGCcgGGcGAUCg -3'
miRNA:   3'- -CUUC-GCGCGCa---GUCgGGGCG--UC-CUAG- -5'
5206 3' -60.1 NC_001798.1 + 53403 0.66 0.71938
Target:  5'- -cGGCacuaCGCGUCGGCCgCCaaGCAGGcgCu -3'
miRNA:   3'- cuUCGc---GCGCAGUCGG-GG--CGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 2974 0.66 0.71938
Target:  5'- -cGGCGUGCGgcggggCGGCcggCCCGCGGGc-- -3'
miRNA:   3'- cuUCGCGCGCa-----GUCG---GGGCGUCCuag -5'
5206 3' -60.1 NC_001798.1 + 24583 0.66 0.716455
Target:  5'- gGAGGCGggcCGCGUggccguggagugccUGGCCgccugCCGCGGGAUCc -3'
miRNA:   3'- -CUUCGC---GCGCA--------------GUCGG-----GGCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 71080 0.66 0.709606
Target:  5'- uAAGC-CGCGUCAG-CCCGCGG--UCg -3'
miRNA:   3'- cUUCGcGCGCAGUCgGGGCGUCcuAG- -5'
5206 3' -60.1 NC_001798.1 + 120783 0.66 0.709606
Target:  5'- -uGGUGUGCGUCAcCaCCCGCGGcauguGGUCg -3'
miRNA:   3'- cuUCGCGCGCAGUcG-GGGCGUC-----CUAG- -5'
5206 3' -60.1 NC_001798.1 + 25412 0.66 0.709606
Target:  5'- --cGCGCGCGcUGGCCUCGCuGGccgCg -3'
miRNA:   3'- cuuCGCGCGCaGUCGGGGCGuCCua-G- -5'
5206 3' -60.1 NC_001798.1 + 31570 0.66 0.709606
Target:  5'- cGggGCGCGCcgcgCGcCCCCGCGcGGccGUCg -3'
miRNA:   3'- -CuuCGCGCGca--GUcGGGGCGU-CC--UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.