miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 5' -58.3 NC_001798.1 + 117482 0.66 0.81605
Target:  5'- -cGGCCGCCGUGuACC---UGCGCa- -3'
miRNA:   3'- uaCUGGCGGCGCuUGGcaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 52411 0.66 0.81605
Target:  5'- cUGAaCGCCGUGcugggcgcGGCCGUguaCGCGCUg -3'
miRNA:   3'- uACUgGCGGCGC--------UUGGCAa--GCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 31572 0.66 0.807343
Target:  5'- -gGGCgCGCCGCGcGCCcc-CGCGCg- -3'
miRNA:   3'- uaCUG-GCGGCGCuUGGcaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 51935 0.66 0.798478
Target:  5'- -gGGCCGCCGCcguGCCGcugcUCaGCGCg- -3'
miRNA:   3'- uaCUGGCGGCGcu-UGGCa---AG-CGCGaa -5'
5206 5' -58.3 NC_001798.1 + 46972 0.66 0.798478
Target:  5'- -gGGCCGCUGgGugguGCUGUuguucgUCGCGCUc -3'
miRNA:   3'- uaCUGGCGGCgCu---UGGCA------AGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 23132 0.66 0.789464
Target:  5'- ---uCCGCCGCGGACCcccuccaugCGCGCc- -3'
miRNA:   3'- uacuGGCGGCGCUUGGcaa------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 29984 0.66 0.780309
Target:  5'- -gGACCcCCGUGGGCCGUgCGcCGCc- -3'
miRNA:   3'- uaCUGGcGGCGCUUGGCAaGC-GCGaa -5'
5206 5' -58.3 NC_001798.1 + 32563 0.66 0.780309
Target:  5'- -gGACCuGCUGCGGGCCGcggccccCGCGUg- -3'
miRNA:   3'- uaCUGG-CGGCGCUUGGCaa-----GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 26308 0.66 0.780309
Target:  5'- --cGCCGCUGCGGcCCGUcuacgUgGCGCUg -3'
miRNA:   3'- uacUGGCGGCGCUuGGCA-----AgCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 52942 0.66 0.771023
Target:  5'- -aGACCGCCGCccuCCGg--GCGCa- -3'
miRNA:   3'- uaCUGGCGGCGcuuGGCaagCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 138598 0.67 0.761614
Target:  5'- -aGGCacuCGCCGCGcugcccgcuGACCGggUCGCGCa- -3'
miRNA:   3'- uaCUG---GCGGCGC---------UUGGCa-AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 81114 0.67 0.761614
Target:  5'- --cGCCGCCgacGCGGACCccuucUUCGCGCg- -3'
miRNA:   3'- uacUGGCGG---CGCUUGGc----AAGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 85987 0.67 0.761614
Target:  5'- -aGGCCGCCGcCGGGgCGcUgGCGCa- -3'
miRNA:   3'- uaCUGGCGGC-GCUUgGCaAgCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 86105 0.67 0.761614
Target:  5'- --cGCCGCCGCGGAcgcCCGc-CGCGCc- -3'
miRNA:   3'- uacUGGCGGCGCUU---GGCaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 88106 0.67 0.761614
Target:  5'- -cGGCCaGCCGCGcGACCGUcuccucuaccUCGCGg-- -3'
miRNA:   3'- uaCUGG-CGGCGC-UUGGCA----------AGCGCgaa -5'
5206 5' -58.3 NC_001798.1 + 57726 0.67 0.752092
Target:  5'- -cGGCCcCCGCGAaggACCGgugggCGCGCc- -3'
miRNA:   3'- uaCUGGcGGCGCU---UGGCaa---GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 43491 0.67 0.752092
Target:  5'- -gGGCCGCCGgGGcauaCGUgcgCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCgCUug--GCAa--GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 86850 0.67 0.742464
Target:  5'- -gGGCCcgGCCGCGAcaagacCCGgcggcggUCGCGCUUu -3'
miRNA:   3'- uaCUGG--CGGCGCUu-----GGCa------AGCGCGAA- -5'
5206 5' -58.3 NC_001798.1 + 27643 0.67 0.742464
Target:  5'- --cGCCGCCGCccGCC-UUCGCGCc- -3'
miRNA:   3'- uacUGGCGGCGcuUGGcAAGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 134917 0.67 0.732741
Target:  5'- -cGGCCGCCGCcgccGCCGagUCgGCGCg- -3'
miRNA:   3'- uaCUGGCGGCGcu--UGGCa-AG-CGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.