miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 27183 0.66 0.744132
Target:  5'- gGGCCgCG-GGcGCGGggGGAGGGGc--- -3'
miRNA:   3'- -CCGGgGCaCC-CGCCa-CCUCCUCaagg -5'
5214 3' -61.1 NC_001798.1 + 147498 0.66 0.744132
Target:  5'- aGGCUCCG-GGGgGG-GGGGGcg--CCu -3'
miRNA:   3'- -CCGGGGCaCCCgCCaCCUCCucaaGG- -5'
5214 3' -61.1 NC_001798.1 + 65849 0.66 0.734834
Target:  5'- uGGCCCgGaGGGUggccugguaguGGUGGccuGGGGGUUUa -3'
miRNA:   3'- -CCGGGgCaCCCG-----------CCACC---UCCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 2395 0.66 0.734834
Target:  5'- aGGCCUCcaGGGCGGcGGccGAGggcgCCg -3'
miRNA:   3'- -CCGGGGcaCCCGCCaCCucCUCaa--GG- -5'
5214 3' -61.1 NC_001798.1 + 67172 0.66 0.726397
Target:  5'- uGGCCCCauggaaaggggggaGgaggGGGCGGggGGAcagccugggguccuuGGGGUUCg -3'
miRNA:   3'- -CCGGGG--------------Ca---CCCGCCa-CCU---------------CCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 56966 0.66 0.725455
Target:  5'- uGGCCCuccagcaccgCGUGGG-GGUGGAuggucagcgacGGAGggCg -3'
miRNA:   3'- -CCGGG----------GCACCCgCCACCU-----------CCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 23868 0.66 0.725455
Target:  5'- cGCCCCGgccucugggGGGCgcccgaGGcGGAGGAGgcgcgggCCc -3'
miRNA:   3'- cCGGGGCa--------CCCG------CCaCCUCCUCaa-----GG- -5'
5214 3' -61.1 NC_001798.1 + 59746 0.66 0.725455
Target:  5'- cGGCCCCG-GGGUGccuccgcuUGGuucccGGcGGUUCCg -3'
miRNA:   3'- -CCGGGGCaCCCGCc-------ACCu----CC-UCAAGG- -5'
5214 3' -61.1 NC_001798.1 + 121860 0.66 0.725455
Target:  5'- cGGCCCCGgGaGGCGacacggccaccGcGGAGGAcGUgUCCa -3'
miRNA:   3'- -CCGGGGCaC-CCGC-----------CaCCUCCU-CA-AGG- -5'
5214 3' -61.1 NC_001798.1 + 22131 0.66 0.724513
Target:  5'- cGGCCCCuuugGGGcCGGcGGGGGccaacgggagcgcGGggCCg -3'
miRNA:   3'- -CCGGGGca--CCC-GCCaCCUCC-------------UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 4112 0.66 0.716003
Target:  5'- cGGCCC--UGGGCGGgcucGGccGGGGcgCCg -3'
miRNA:   3'- -CCGGGgcACCCGCCa---CCu-CCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 97586 0.66 0.716003
Target:  5'- cGGCCCCGagccagGGGCGcagGGGccGGAGagCUg -3'
miRNA:   3'- -CCGGGGCa-----CCCGCca-CCU--CCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 42886 0.66 0.716003
Target:  5'- gGGCCUCGUGGaGcCGG-GGAaaGGGGacggcUCCu -3'
miRNA:   3'- -CCGGGGCACC-C-GCCaCCU--CCUCa----AGG- -5'
5214 3' -61.1 NC_001798.1 + 153228 0.66 0.716003
Target:  5'- cGGCCCgGgcccGcGGCGGcGGAGGAc--CCg -3'
miRNA:   3'- -CCGGGgCa---C-CCGCCaCCUCCUcaaGG- -5'
5214 3' -61.1 NC_001798.1 + 129294 0.66 0.706486
Target:  5'- aGGCaCCgCGcgGGcGCGGaGGAGGGcgugacGUUCCg -3'
miRNA:   3'- -CCG-GG-GCa-CC-CGCCaCCUCCU------CAAGG- -5'
5214 3' -61.1 NC_001798.1 + 71586 0.66 0.706486
Target:  5'- cGGCUCUGUGaGGCGGUcGGccugucGGGcGgcgUCCu -3'
miRNA:   3'- -CCGGGGCAC-CCGCCA-CC------UCCuCa--AGG- -5'
5214 3' -61.1 NC_001798.1 + 56171 0.66 0.706486
Target:  5'- cGCCCgG-GGGaCGGcGGGGGGGUg-- -3'
miRNA:   3'- cCGGGgCaCCC-GCCaCCUCCUCAagg -5'
5214 3' -61.1 NC_001798.1 + 29674 0.66 0.706486
Target:  5'- cGGCCC----GGCGGgaGGAGGAGacCCg -3'
miRNA:   3'- -CCGGGgcacCCGCCa-CCUCCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 5602 0.66 0.704576
Target:  5'- cGCCCCGUugguccgcGGGCGGcuccgccccaaaGGGGGcGGggCCg -3'
miRNA:   3'- cCGGGGCA--------CCCGCCa-----------CCUCC-UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 128854 0.66 0.700748
Target:  5'- cGGCCuCCGcguacgaggaccugaUGGcGCGGcgaucgccGGAGGcGUUCCg -3'
miRNA:   3'- -CCGG-GGC---------------ACC-CGCCa-------CCUCCuCAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.