miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 66322 0.66 0.855842
Target:  5'- --aGGCCuCCCGGGuACggaUgCGCAGGUGg -3'
miRNA:   3'- augUUGG-GGGCCC-UGa--AgGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 26459 0.66 0.855842
Target:  5'- cGCGggcccGCCCCCGcagauacgcuGGGCgucggCCGCGGGCc -3'
miRNA:   3'- aUGU-----UGGGGGC----------CCUGaa---GGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 106111 0.66 0.855842
Target:  5'- cGCGACCgCCGGG---UCUGCGguuccGGCGg -3'
miRNA:   3'- aUGUUGGgGGCCCugaAGGCGU-----UCGC- -5'
5216 3' -57.7 NC_001798.1 + 85988 0.66 0.848037
Target:  5'- gGCcGCCgCCGGGGCgcuggCGCAGGgGg -3'
miRNA:   3'- aUGuUGGgGGCCCUGaag--GCGUUCgC- -5'
5216 3' -57.7 NC_001798.1 + 73248 0.66 0.848037
Target:  5'- gGgGGCCCCCGGGGac-CUGgAGGCc -3'
miRNA:   3'- aUgUUGGGGGCCCUgaaGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 59745 0.66 0.848037
Target:  5'- -uCGGCCCCgGGGuGCcUCCGCuugguucccGGCGg -3'
miRNA:   3'- auGUUGGGGgCCC-UGaAGGCGu--------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 59133 0.66 0.848037
Target:  5'- cGCgAACCCCCGaGcGAUggcacccaCGCAGGCGa -3'
miRNA:   3'- aUG-UUGGGGGC-C-CUGaag-----GCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 19810 0.66 0.848037
Target:  5'- gGC-ACCCguccucgcguuCUGGGGCUUCCGUugcGCGa -3'
miRNA:   3'- aUGuUGGG-----------GGCCCUGAAGGCGuu-CGC- -5'
5216 3' -57.7 NC_001798.1 + 70928 0.66 0.845658
Target:  5'- gACGACCCCCgaucGGGGCgcgguggucccgccgCCGCugcuGGCc -3'
miRNA:   3'- aUGUUGGGGG----CCCUGaa-------------GGCGu---UCGc -5'
5216 3' -57.7 NC_001798.1 + 492 0.66 0.843262
Target:  5'- cGCGccccGCCCCgGGGGCUUcccccgccccuccccCCGCGcccGCGg -3'
miRNA:   3'- aUGU----UGGGGgCCCUGAA---------------GGCGUu--CGC- -5'
5216 3' -57.7 NC_001798.1 + 26549 0.66 0.84004
Target:  5'- gGgGACCgCCgCGGGGCUggccacgCCGCcgAGGCGc -3'
miRNA:   3'- aUgUUGG-GG-GCCCUGAa------GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 2497 0.66 0.84004
Target:  5'- -uCAGCgCCgCGGGGCgcggcggCCGCGgcGGCGg -3'
miRNA:   3'- auGUUGgGG-GCCCUGaa-----GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 103374 0.66 0.84004
Target:  5'- aACGGCCCCCGaGGGuCguugaccaCgGCGAGCa -3'
miRNA:   3'- aUGUUGGGGGC-CCU-Gaa------GgCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 146438 0.66 0.84004
Target:  5'- gUGCGgaGCCCCCGGaGcccGCggCCGCAgccgAGCa -3'
miRNA:   3'- -AUGU--UGGGGGCC-C---UGaaGGCGU----UCGc -5'
5216 3' -57.7 NC_001798.1 + 132133 0.66 0.83923
Target:  5'- gGCGGCCCugcgccgCCGGGGg--CCGgCGGGCGg -3'
miRNA:   3'- aUGUUGGG-------GGCCCUgaaGGC-GUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 123028 0.66 0.835152
Target:  5'- gGCAGCCCCUccacugccccacacaGGG---UCUGCGAGCa -3'
miRNA:   3'- aUGUUGGGGG---------------CCCugaAGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 147012 0.66 0.831856
Target:  5'- gGgGACCCCCGGGcgggccgggGCUuggCCGCcgAGGUGc -3'
miRNA:   3'- aUgUUGGGGGCCC---------UGAa--GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 129264 0.66 0.831856
Target:  5'- cUGCAACCgcaCCUGGuGACgUUCCucgGCAGGCa -3'
miRNA:   3'- -AUGUUGG---GGGCC-CUG-AAGG---CGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 125403 0.66 0.831856
Target:  5'- aGCAACCgCCGcGcGACggCCGagaaGAGCGg -3'
miRNA:   3'- aUGUUGGgGGC-C-CUGaaGGCg---UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 25619 0.66 0.831856
Target:  5'- gGCccCCCCCGGaGuggUCCGcCGAGCGc -3'
miRNA:   3'- aUGuuGGGGGCC-CugaAGGC-GUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.