miRNA display CGI


Results 1 - 20 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 130993 0.66 0.685033
Target:  5'- uGGCGUguggcaUCGCcauacgGGCCGcCGCC-AGGCGa -3'
miRNA:   3'- -CCGCG------AGCG------CCGGUuGCGGcUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 72818 0.66 0.685033
Target:  5'- cGGCGcCUCuCGGCCGGCuaucagGCCGcacGcGCGGc -3'
miRNA:   3'- -CCGC-GAGcGCCGGUUG------CGGCu--C-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 65828 0.66 0.685033
Target:  5'- uGGCGCUCacguugcCGGUgAugGCCcggaGGGUGGc -3'
miRNA:   3'- -CCGCGAGc------GCCGgUugCGGc---UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 16998 0.66 0.685033
Target:  5'- cGGCGCUUG-GGCgGAgCGCCGcgucaaAGGUaaGGg -3'
miRNA:   3'- -CCGCGAGCgCCGgUU-GCGGC------UCCG--CC- -5'
5216 5' -62.5 NC_001798.1 + 31572 0.66 0.679291
Target:  5'- gGGCGCgccgcgcgcccccgCGCGGCCGuCGCCccGcGCGu -3'
miRNA:   3'- -CCGCGa-------------GCGCCGGUuGCGGcuC-CGCc -5'
5216 5' -62.5 NC_001798.1 + 76956 0.66 0.675457
Target:  5'- cGGCGCU-GCGGgCGGaccugugggggcUGCUGGGGCa- -3'
miRNA:   3'- -CCGCGAgCGCCgGUU------------GCGGCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 73812 0.66 0.675457
Target:  5'- cGGaaccaGUUCGCGaCCGAUcuggaGCCGGGGgGGu -3'
miRNA:   3'- -CCg----CGAGCGCcGGUUG-----CGGCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 57165 0.66 0.675457
Target:  5'- uGGCGCcCG-GGCCGGCGCCcuccgcccaGAucacGuGCGGg -3'
miRNA:   3'- -CCGCGaGCgCCGGUUGCGG---------CU----C-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 42335 0.66 0.675457
Target:  5'- cGGCaagCGCaGGCUGugGCCGuGGGCGu -3'
miRNA:   3'- -CCGcgaGCG-CCGGUugCGGC-UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 11999 0.66 0.675457
Target:  5'- uGGUGCgUCGagcgacacaaGGUgAACGCCacggcGGGGCGGc -3'
miRNA:   3'- -CCGCG-AGCg---------CCGgUUGCGG-----CUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 3008 0.66 0.675457
Target:  5'- gGGCGCgggggCGCGGCgG--GCCG-GGCu- -3'
miRNA:   3'- -CCGCGa----GCGCCGgUugCGGCuCCGcc -5'
5216 5' -62.5 NC_001798.1 + 88234 0.66 0.675457
Target:  5'- aGGCGCUUGuUGGUguACGCgCGcGGGUGu -3'
miRNA:   3'- -CCGCGAGC-GCCGguUGCG-GC-UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 140191 0.66 0.675457
Target:  5'- gGGcCGCcUGCGGCCggUGCUGGuguGcGUGGg -3'
miRNA:   3'- -CC-GCGaGCGCCGGuuGCGGCU---C-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 143136 0.66 0.675457
Target:  5'- uGCGCUggcgCGCGGCCGuccccgaaaACGaCGAGGUcuuGGu -3'
miRNA:   3'- cCGCGA----GCGCCGGU---------UGCgGCUCCG---CC- -5'
5216 5' -62.5 NC_001798.1 + 57553 0.66 0.675457
Target:  5'- uGCGUUcCGCGGg-GACGCgGAGGgGGc -3'
miRNA:   3'- cCGCGA-GCGCCggUUGCGgCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 73223 0.66 0.675457
Target:  5'- cGGCGUUU-CGGCCuucCGCCGGcccGGgGGc -3'
miRNA:   3'- -CCGCGAGcGCCGGuu-GCGGCU---CCgCC- -5'
5216 5' -62.5 NC_001798.1 + 80691 0.66 0.675457
Target:  5'- cGGUGCUCcucgGCGcGCC--CGUCGuGGUGGc -3'
miRNA:   3'- -CCGCGAG----CGC-CGGuuGCGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 91052 0.66 0.675457
Target:  5'- cGCGCUCGUcccccccgcaGuaCAccuuaggggcGCGCCGgAGGCGGc -3'
miRNA:   3'- cCGCGAGCG----------CcgGU----------UGCGGC-UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 150886 0.66 0.675457
Target:  5'- gGGuCGCcccCGCaccGCCGcccccGCGCCGGGGCGc -3'
miRNA:   3'- -CC-GCGa--GCGc--CGGU-----UGCGGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 102388 0.66 0.665849
Target:  5'- uGGCGgUCgGCGGCgAugGCCcccaccAGcGCGGc -3'
miRNA:   3'- -CCGCgAG-CGCCGgUugCGGc-----UC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.