miRNA display CGI


Results 1 - 20 of 615 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5219 3' -64.2 NC_001798.1 + 150815 0.66 0.620909
Target:  5'- gCCGCCGCugcugcugcuCCgCGGgGCGCCagGGGGCg -3'
miRNA:   3'- gGGCGGUG----------GG-GCUgCGUGGg-CCUCGg -5'
5219 3' -64.2 NC_001798.1 + 7622 0.66 0.620909
Target:  5'- aCUCGCgGCaCCG-CGCGgaccggccCCCGGAGUCc -3'
miRNA:   3'- -GGGCGgUGgGGCuGCGU--------GGGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 11065 0.66 0.620909
Target:  5'- aCCCGCCuCCCauGC-CAUCCGGGGa- -3'
miRNA:   3'- -GGGCGGuGGGgcUGcGUGGGCCUCgg -5'
5219 3' -64.2 NC_001798.1 + 105334 0.66 0.620909
Target:  5'- aCCUGCUGCUCgaucgGGCGUAUCCGGcGCUc -3'
miRNA:   3'- -GGGCGGUGGGg----CUGCGUGGGCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 146579 0.66 0.620909
Target:  5'- gCCGCgGgCCagcaGACGgGCCgCGGcGCCa -3'
miRNA:   3'- gGGCGgUgGGg---CUGCgUGG-GCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 1405 0.66 0.620909
Target:  5'- --gGCCGCagCGGCGCGCCCaG-GCCc -3'
miRNA:   3'- gggCGGUGggGCUGCGUGGGcCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 24422 0.66 0.620909
Target:  5'- -gCGUCGCCggCCGACgaGCGCgCGGuGCCc -3'
miRNA:   3'- ggGCGGUGG--GGCUG--CGUGgGCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 44613 0.66 0.620909
Target:  5'- cCUCuCCugUUCGguggGCGCGCCCguGGGGCCa -3'
miRNA:   3'- -GGGcGGugGGGC----UGCGUGGG--CCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 91783 0.66 0.620909
Target:  5'- gCCaCGCCcCCugCCGAUGaCGCgCGGGGCg -3'
miRNA:   3'- -GG-GCGGuGG--GGCUGC-GUGgGCCUCGg -5'
5219 3' -64.2 NC_001798.1 + 97779 0.66 0.620909
Target:  5'- -gUGCUGCCCgCGACcuuCGCCgCGGuGCCa -3'
miRNA:   3'- ggGCGGUGGG-GCUGc--GUGG-GCCuCGG- -5'
5219 3' -64.2 NC_001798.1 + 121678 0.66 0.620909
Target:  5'- gUCGCUACgUCG-CGCgGCUgGGGGCCg -3'
miRNA:   3'- gGGCGGUGgGGCuGCG-UGGgCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 150225 0.66 0.620909
Target:  5'- gCCGCgggggACCCCGGguccucccucCGCGCCCGGc-CCu -3'
miRNA:   3'- gGGCGg----UGGGGCU----------GCGUGGGCCucGG- -5'
5219 3' -64.2 NC_001798.1 + 63350 0.66 0.619007
Target:  5'- gCCGCCAgggcCCCCGGacucaggauagaGCugUccguCGGGGCCu -3'
miRNA:   3'- gGGCGGU----GGGGCUg-----------CGugG----GCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 63680 0.66 0.612352
Target:  5'- aCCCGCgccuccagccagucCACCuuGACGCGaauggCCGGgugguugauggugcgGGCCa -3'
miRNA:   3'- -GGGCG--------------GUGGggCUGCGUg----GGCC---------------UCGG- -5'
5219 3' -64.2 NC_001798.1 + 5973 0.66 0.611401
Target:  5'- gCCGCCGCaccaggggacaCCGGCuGCGCggCGGAGaCCg -3'
miRNA:   3'- gGGCGGUGg----------GGCUG-CGUGg-GCCUC-GG- -5'
5219 3' -64.2 NC_001798.1 + 22669 0.66 0.611401
Target:  5'- cCCCGCaCACCCCGGucggagGCGaugucggCGGAGCa -3'
miRNA:   3'- -GGGCG-GUGGGGCUg-----CGUgg-----GCCUCGg -5'
5219 3' -64.2 NC_001798.1 + 86925 0.66 0.611401
Target:  5'- uCCCGCaagaGCCugCCGuCGCACgcgcgcaggCUGGAGCUc -3'
miRNA:   3'- -GGGCGg---UGG--GGCuGCGUG---------GGCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 105084 0.66 0.611401
Target:  5'- aCCCGCgGCCCCG-CG-GCCCGcGuacaCCa -3'
miRNA:   3'- -GGGCGgUGGGGCuGCgUGGGC-Cuc--GG- -5'
5219 3' -64.2 NC_001798.1 + 139591 0.66 0.611401
Target:  5'- uCCCGaCCGgCCUGcCGCuCCgGGAGUUu -3'
miRNA:   3'- -GGGC-GGUgGGGCuGCGuGGgCCUCGG- -5'
5219 3' -64.2 NC_001798.1 + 3924 0.66 0.611401
Target:  5'- cCCCGCUGacguaCCCGucgcgguaGCGCGCguagaaggcgCCGGAGgCCg -3'
miRNA:   3'- -GGGCGGUg----GGGC--------UGCGUG----------GGCCUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.