Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5219 | 5' | -57.7 | NC_001798.1 | + | 65538 | 0.66 | 0.851849 |
Target: 5'- gCGGAU-CAGGCGCUugaagaacaGGUCCGGc--- -3' miRNA: 3'- aGCCUAgGUCCGCGA---------CCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 9983 | 0.66 | 0.851849 |
Target: 5'- gCGGAccgCCAGGCGgUacGCCCAGg--- -3' miRNA: 3'- aGCCUa--GGUCCGCgAc-CGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 102218 | 0.66 | 0.851849 |
Target: 5'- -gGGAgucgaCCGGGCGC-GGCUCGGg--- -3' miRNA: 3'- agCCUa----GGUCCGCGaCCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 36326 | 0.66 | 0.843927 |
Target: 5'- cCGGggCCGGGgcuCGCUGGUCCGc---- -3' miRNA: 3'- aGCCuaGGUCC---GCGACCGGGUcaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 17577 | 0.66 | 0.843927 |
Target: 5'- aCGGAgaCGGGCGCUuGCUCAGa--- -3' miRNA: 3'- aGCCUagGUCCGCGAcCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 11749 | 0.66 | 0.843927 |
Target: 5'- -aGGGUcCCAGGCGCggGGCCgAa---- -3' miRNA: 3'- agCCUA-GGUCCGCGa-CCGGgUcaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 51159 | 0.66 | 0.835815 |
Target: 5'- cCGGGUCCcgacGCGCguccgaGGCCCGGg--- -3' miRNA: 3'- aGCCUAGGuc--CGCGa-----CCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 57201 | 0.66 | 0.835815 |
Target: 5'- gCGGGUCCguucgguuggGGGCGCUGucauacaCCAGUUg- -3' miRNA: 3'- aGCCUAGG----------UCCGCGACcg-----GGUCAAac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 52884 | 0.66 | 0.835815 |
Target: 5'- gCGGGUCCGcGCGUggacaucaUGGCgCAGUUUc -3' miRNA: 3'- aGCCUAGGUcCGCG--------ACCGgGUCAAAc -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 34739 | 0.66 | 0.835815 |
Target: 5'- gUCGGGcCCGGGaGCggggcGGCCCGGg--- -3' miRNA: 3'- -AGCCUaGGUCCgCGa----CCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 4090 | 0.66 | 0.82752 |
Target: 5'- -gGGGUCCGGGCcgggGCgGGCUCGGc--- -3' miRNA: 3'- agCCUAGGUCCG----CGaCCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 134885 | 0.66 | 0.81905 |
Target: 5'- -gGGAuuUCCGGGC--UGGCCCAcGUUUa -3' miRNA: 3'- agCCU--AGGUCCGcgACCGGGU-CAAAc -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 35541 | 0.66 | 0.81905 |
Target: 5'- cCGGcgCgGGGCGUUgccGGCCCGGc--- -3' miRNA: 3'- aGCCuaGgUCCGCGA---CCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 131357 | 0.66 | 0.810411 |
Target: 5'- gUCGGcgCCcGGCGC-GGCCuCGGg--- -3' miRNA: 3'- -AGCCuaGGuCCGCGaCCGG-GUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 120215 | 0.66 | 0.810411 |
Target: 5'- cUCGGGccCCGGGcCGUUGGCCCc----- -3' miRNA: 3'- -AGCCUa-GGUCC-GCGACCGGGucaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 31793 | 0.66 | 0.810411 |
Target: 5'- gUCGGGagggCCGGGCGCggagggaGGaCCCGGg--- -3' miRNA: 3'- -AGCCUa---GGUCCGCGa------CC-GGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 153436 | 0.66 | 0.810411 |
Target: 5'- gUCGGG-CCAGGCGCgcGGCCg------ -3' miRNA: 3'- -AGCCUaGGUCCGCGa-CCGGgucaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 132546 | 0.67 | 0.801613 |
Target: 5'- aCGGGUCCgGGGCGCgcucgGaGCCCGu---- -3' miRNA: 3'- aGCCUAGG-UCCGCGa----C-CGGGUcaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 127940 | 0.67 | 0.801613 |
Target: 5'- gCGGGgccCCGGGCGaaaaGGCCCGGc--- -3' miRNA: 3'- aGCCUa--GGUCCGCga--CCGGGUCaaac -5' |
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5219 | 5' | -57.7 | NC_001798.1 | + | 34785 | 0.67 | 0.801613 |
Target: 5'- gCGGAaacgCCGccGGCGC-GGCCCGGg--- -3' miRNA: 3'- aGCCUa---GGU--CCGCGaCCGGGUCaaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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