miRNA display CGI


Results 1 - 20 of 495 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5221 5' -65.2 NC_001798.1 + 92027 0.66 0.540392
Target:  5'- aCCCCCAccAGGggCCGCUCGgCGaacGGGCg -3'
miRNA:   3'- -GGGGGU--UCCggGGCGGGCgGU---UCCGg -5'
5221 5' -65.2 NC_001798.1 + 77826 0.66 0.540392
Target:  5'- aCCCCCGGGaCuUCCGCaacgCGCCGAgcaggcgcucgcGGCCa -3'
miRNA:   3'- -GGGGGUUCcG-GGGCGg---GCGGUU------------CCGG- -5'
5221 5' -65.2 NC_001798.1 + 145886 0.66 0.540392
Target:  5'- cCCCCCA---CCCCGaCCGCCGccGCg -3'
miRNA:   3'- -GGGGGUuccGGGGCgGGCGGUucCGg -5'
5221 5' -65.2 NC_001798.1 + 92948 0.66 0.540392
Target:  5'- gCCgCCGuGGCCCUgcguGCCCggaacguggacGCCGuGGCCc -3'
miRNA:   3'- -GGgGGUuCCGGGG----CGGG-----------CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 24385 0.66 0.540392
Target:  5'- gCCCgCCGccGCCgCCGCCCcguuGCCGucGGCg -3'
miRNA:   3'- -GGG-GGUucCGG-GGCGGG----CGGUu-CCGg -5'
5221 5' -65.2 NC_001798.1 + 121773 0.66 0.540392
Target:  5'- cUCCCCAGGcGUCCUcgGUCUcgGgCGGGGCCg -3'
miRNA:   3'- -GGGGGUUC-CGGGG--CGGG--CgGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 71844 0.66 0.537607
Target:  5'- cUCCCCGucGGGCgCCuagccaCGCCCccucgguucaccugGCCGcGGCCa -3'
miRNA:   3'- -GGGGGU--UCCG-GG------GCGGG--------------CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 134372 0.66 0.537607
Target:  5'- gCCCgCC--GGCCgcuccucgcgCCGCCCuccuggacguggagGCCAAGGUCg -3'
miRNA:   3'- -GGG-GGuuCCGG----------GGCGGG--------------CGGUUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 123759 0.66 0.53668
Target:  5'- aCCCCC--GGaCCCCGCUgcugugcacccuaGCCuucGGCCa -3'
miRNA:   3'- -GGGGGuuCC-GGGGCGGg------------CGGuu-CCGG- -5'
5221 5' -65.2 NC_001798.1 + 135188 0.66 0.534827
Target:  5'- gCUCCAGGcccaGCuCCUGgCCGCCcucgcgggccucgggGAGGCCg -3'
miRNA:   3'- gGGGGUUC----CG-GGGCgGGCGG---------------UUCCGG- -5'
5221 5' -65.2 NC_001798.1 + 458 0.66 0.531128
Target:  5'- gUCCCGcGGCCgCCuCCC-CCGcGGCCg -3'
miRNA:   3'- gGGGGUuCCGG-GGcGGGcGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 9021 0.66 0.531128
Target:  5'- gCCCCGAGacCCaCCGCCCcCCGcaGCCa -3'
miRNA:   3'- gGGGGUUCc-GG-GGCGGGcGGUucCGG- -5'
5221 5' -65.2 NC_001798.1 + 25607 0.66 0.531128
Target:  5'- gCgCCGggggcGGGCCCCccccggagugGUCCGCCGAGcGCg -3'
miRNA:   3'- gGgGGU-----UCCGGGG----------CGGGCGGUUC-CGg -5'
5221 5' -65.2 NC_001798.1 + 27472 0.66 0.531128
Target:  5'- gUCCCC---GUCCUGCCgCGCgGGGGCg -3'
miRNA:   3'- -GGGGGuucCGGGGCGG-GCGgUUCCGg -5'
5221 5' -65.2 NC_001798.1 + 55928 0.66 0.531128
Target:  5'- gCCCCGAcgaucGCUCCGa-CGCCGauccAGGCCa -3'
miRNA:   3'- gGGGGUUc----CGGGGCggGCGGU----UCCGG- -5'
5221 5' -65.2 NC_001798.1 + 75457 0.66 0.531128
Target:  5'- --gCCGGGGUggCCgGCCCgGCCGcGGCCc -3'
miRNA:   3'- gggGGUUCCG--GGgCGGG-CGGUuCCGG- -5'
5221 5' -65.2 NC_001798.1 + 115597 0.66 0.531128
Target:  5'- uCgCCCAcggccGGGUCCgGUgggUCGCCGAGuGCCa -3'
miRNA:   3'- -GgGGGU-----UCCGGGgCG---GGCGGUUC-CGG- -5'
5221 5' -65.2 NC_001798.1 + 21108 0.66 0.531128
Target:  5'- cCCCCCGGcccGUCCC-CCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGUUc--CGGGGcGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 21150 0.66 0.531128
Target:  5'- cCCCCCGGcccGUCCC-CCCGUCcccccGGCCc -3'
miRNA:   3'- -GGGGGUUc--CGGGGcGGGCGGuu---CCGG- -5'
5221 5' -65.2 NC_001798.1 + 141787 0.66 0.531128
Target:  5'- gCUCCCAGGGgCUCaGUCUGgaCAAGGUCg -3'
miRNA:   3'- -GGGGGUUCCgGGG-CGGGCg-GUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.