miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 46102 0.66 0.478749
Target:  5'- aCGCacaGGCguGCCCGGagggCCaGCGCGu -3'
miRNA:   3'- -GCGg--CCGguCGGGUCgga-GGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 94579 0.66 0.478749
Target:  5'- gCGCgGGUCG--CCAGCCUCCagaGCGCc -3'
miRNA:   3'- -GCGgCCGGUcgGGUCGGAGGa--CGCGc -5'
5226 5' -66 NC_001798.1 + 77434 0.66 0.478749
Target:  5'- gCGCCgGGCCugcGCCCAGCCggagggggaCCaUGcCGCc -3'
miRNA:   3'- -GCGG-CCGGu--CGGGUCGGa--------GG-AC-GCGc -5'
5226 5' -66 NC_001798.1 + 138995 0.66 0.469905
Target:  5'- cCGCuCGGCCAcCCCGGCgauaucgccCUCCcGgGCGu -3'
miRNA:   3'- -GCG-GCCGGUcGGGUCG---------GAGGaCgCGC- -5'
5226 5' -66 NC_001798.1 + 153052 0.66 0.469905
Target:  5'- gGuuGGCCGGCgCC-GCCcCCUGgGgCGg -3'
miRNA:   3'- gCggCCGGUCG-GGuCGGaGGACgC-GC- -5'
5226 5' -66 NC_001798.1 + 33245 0.66 0.469905
Target:  5'- aGCCGG--GGCCCGGCCUCguuCUG-GCu -3'
miRNA:   3'- gCGGCCggUCGGGUCGGAG---GACgCGc -5'
5226 5' -66 NC_001798.1 + 35471 0.66 0.469905
Target:  5'- uGCUGGCCcgcGGCCC-GUCUgCUGgccCGCGg -3'
miRNA:   3'- gCGGCCGG---UCGGGuCGGAgGAC---GCGC- -5'
5226 5' -66 NC_001798.1 + 25308 0.66 0.461145
Target:  5'- -cUCGGCCGccGCCCuggaGGCCUaCUGCGCc -3'
miRNA:   3'- gcGGCCGGU--CGGG----UCGGAgGACGCGc -5'
5226 5' -66 NC_001798.1 + 37161 0.66 0.461145
Target:  5'- gCGCCGcGCC-GCCUGGCgggCCgcucgGCGCGc -3'
miRNA:   3'- -GCGGC-CGGuCGGGUCGga-GGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 80384 0.66 0.461145
Target:  5'- aGuCCGGCCcaGGCCCuggcggcggugAGCgUCCUcggGCGCa -3'
miRNA:   3'- gC-GGCCGG--UCGGG-----------UCGgAGGA---CGCGc -5'
5226 5' -66 NC_001798.1 + 103016 0.66 0.461145
Target:  5'- gCGcCCGGCCagcgcgAGCUCGGCCUCg-GCGg- -3'
miRNA:   3'- -GC-GGCCGG------UCGGGUCGGAGgaCGCgc -5'
5226 5' -66 NC_001798.1 + 115528 0.66 0.461145
Target:  5'- aCGUcgCGGCCccGgCCGGCC-CCgGCGCGg -3'
miRNA:   3'- -GCG--GCCGGu-CgGGUCGGaGGaCGCGC- -5'
5226 5' -66 NC_001798.1 + 134487 0.66 0.461145
Target:  5'- gCGCCuGGCC-GCCauucgcgaCAGCCcCCagUGCGCGu -3'
miRNA:   3'- -GCGG-CCGGuCGG--------GUCGGaGG--ACGCGC- -5'
5226 5' -66 NC_001798.1 + 32392 0.66 0.461145
Target:  5'- -cCCGGC--GCCCGGCCUCaC-GCGCu -3'
miRNA:   3'- gcGGCCGguCGGGUCGGAG-GaCGCGc -5'
5226 5' -66 NC_001798.1 + 73012 0.66 0.461145
Target:  5'- gCGCCccCCAGCCCGGCCgcagaCCUcgucGUGCu -3'
miRNA:   3'- -GCGGccGGUCGGGUCGGa----GGA----CGCGc -5'
5226 5' -66 NC_001798.1 + 5904 0.66 0.461145
Target:  5'- cCGCCccgaGGCgGGCCCggacggggggcgGGCCguUCCUcGCGCa -3'
miRNA:   3'- -GCGG----CCGgUCGGG------------UCGG--AGGA-CGCGc -5'
5226 5' -66 NC_001798.1 + 23714 0.66 0.455931
Target:  5'- gGCCGGgCGGCCCcggcgggucgaGcuggacgccgacgcgGCCUCCgGCGCc -3'
miRNA:   3'- gCGGCCgGUCGGG-----------U---------------CGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 78856 0.66 0.452472
Target:  5'- aCGCCGGCC-GCCUgggGGCgCUCUUugauacucgGCGCc -3'
miRNA:   3'- -GCGGCCGGuCGGG---UCG-GAGGA---------CGCGc -5'
5226 5' -66 NC_001798.1 + 147078 0.66 0.452472
Target:  5'- uCGgCGGCC-GCCC--CCUCCgGCGCc -3'
miRNA:   3'- -GCgGCCGGuCGGGucGGAGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 146491 0.66 0.452472
Target:  5'- gGCCgGGCCGGgCCGGCaacgCCccGCGCc -3'
miRNA:   3'- gCGG-CCGGUCgGGUCGga--GGa-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.