miRNA display CGI


Results 21 - 40 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5226 5' -66 NC_001798.1 + 138892 0.68 0.348632
Target:  5'- aGCUGGUCGGUCCgcuugGGCCgCCcgGCGCa -3'
miRNA:   3'- gCGGCCGGUCGGG-----UCGGaGGa-CGCGc -5'
5226 5' -66 NC_001798.1 + 137918 0.74 0.133126
Target:  5'- cCGCCGGgCGGCCCGcGCCUCCcccgGcCGCc -3'
miRNA:   3'- -GCGGCCgGUCGGGU-CGGAGGa---C-GCGc -5'
5226 5' -66 NC_001798.1 + 137342 0.68 0.332119
Target:  5'- gGUCGGCCAucccugcguucgacGcCCCAGCCcuggUCCgGCGCa -3'
miRNA:   3'- gCGGCCGGU--------------C-GGGUCGG----AGGaCGCGc -5'
5226 5' -66 NC_001798.1 + 135774 0.72 0.186214
Target:  5'- gGCCGGCCgccGGCCCgccggaggaGGCCgUgUGCGCGg -3'
miRNA:   3'- gCGGCCGG---UCGGG---------UCGGaGgACGCGC- -5'
5226 5' -66 NC_001798.1 + 135529 0.7 0.26294
Target:  5'- aCGCCcGCCGGgCCCucgaGGCgUCCgUGCGCGc -3'
miRNA:   3'- -GCGGcCGGUC-GGG----UCGgAGG-ACGCGC- -5'
5226 5' -66 NC_001798.1 + 135055 0.72 0.190647
Target:  5'- aGgCGGCCGGCC--GCCUCCUGCcCGc -3'
miRNA:   3'- gCgGCCGGUCGGguCGGAGGACGcGC- -5'
5226 5' -66 NC_001798.1 + 134914 0.68 0.33424
Target:  5'- uGCCGGCC-GCCgCcGCCgCCgagucgGCGCGu -3'
miRNA:   3'- gCGGCCGGuCGG-GuCGGaGGa-----CGCGC- -5'
5226 5' -66 NC_001798.1 + 134487 0.66 0.461145
Target:  5'- gCGCCuGGCC-GCCauucgcgaCAGCCcCCagUGCGCGu -3'
miRNA:   3'- -GCGG-CCGGuCGG--------GUCGGaGG--ACGCGC- -5'
5226 5' -66 NC_001798.1 + 134374 0.68 0.33424
Target:  5'- cCGCCGGCCGcuccucGCgCCGcCCUCCUGgaCGUGg -3'
miRNA:   3'- -GCGGCCGGU------CG-GGUcGGAGGAC--GCGC- -5'
5226 5' -66 NC_001798.1 + 134287 0.66 0.427002
Target:  5'- gGCCGGUgGGCCCucuucGUCcCgCUGCGCc -3'
miRNA:   3'- gCGGCCGgUCGGGu----CGGaG-GACGCGc -5'
5226 5' -66 NC_001798.1 + 128276 0.66 0.452472
Target:  5'- gGCuCGGCCGGCaCCucuGGCg-CCUGaCGCGc -3'
miRNA:   3'- gCG-GCCGGUCG-GG---UCGgaGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 128151 0.7 0.268877
Target:  5'- gCGCCa-CCuGCgCGGCCUgCUGCGCGg -3'
miRNA:   3'- -GCGGccGGuCGgGUCGGAgGACGCGC- -5'
5226 5' -66 NC_001798.1 + 127028 0.67 0.386509
Target:  5'- gGCCGGCCGuCCUGGCCgacuuuagCCUG-GUGa -3'
miRNA:   3'- gCGGCCGGUcGGGUCGGa-------GGACgCGC- -5'
5226 5' -66 NC_001798.1 + 126850 0.69 0.287336
Target:  5'- -aUCGGCCAGCUgGcGUC-CCUGCGCGc -3'
miRNA:   3'- gcGGCCGGUCGGgU-CGGaGGACGCGC- -5'
5226 5' -66 NC_001798.1 + 126431 0.69 0.320288
Target:  5'- gGCCcugcGGCCAagcuaaggcGCCC-GCC-CCUGCGCa -3'
miRNA:   3'- gCGG----CCGGU---------CGGGuCGGaGGACGCGc -5'
5226 5' -66 NC_001798.1 + 122406 0.67 0.39361
Target:  5'- aGCUGGCCacGGCCCugacggaGGCCUgugCCgccgaGCGCGu -3'
miRNA:   3'- gCGGCCGG--UCGGG-------UCGGA---GGa----CGCGC- -5'
5226 5' -66 NC_001798.1 + 122088 0.67 0.386509
Target:  5'- uGCUGGCgGGCCUggAGCCgCCcgGCGgGg -3'
miRNA:   3'- gCGGCCGgUCGGG--UCGGaGGa-CGCgC- -5'
5226 5' -66 NC_001798.1 + 121436 0.7 0.274922
Target:  5'- -cCCGGCgCA-CCCGGaCCUCCUGcCGCGc -3'
miRNA:   3'- gcGGCCG-GUcGGGUC-GGAGGAC-GCGC- -5'
5226 5' -66 NC_001798.1 + 117524 0.74 0.143179
Target:  5'- gGCUggGGCCGGCCCAGCCccUCCcggucuuuggcUGCGCc -3'
miRNA:   3'- gCGG--CCGGUCGGGUCGG--AGG-----------ACGCGc -5'
5226 5' -66 NC_001798.1 + 115751 0.69 0.306777
Target:  5'- -cCCGGCCGGUCCgggggcauccaGGCCaCCUGgCGCGu -3'
miRNA:   3'- gcGGCCGGUCGGG-----------UCGGaGGAC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.