miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 96350 0.66 0.562704
Target:  5'- uGCGG-CGGCa--CCUGCG-GCCGGGg -3'
miRNA:   3'- cUGCCaGUCGggaGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 29974 0.66 0.562704
Target:  5'- aGCGGUCGGgggaCC-CCCGUGgGCCGu- -3'
miRNA:   3'- cUGCCAGUCg---GGaGGGCGCgCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 111221 0.66 0.562704
Target:  5'- cACGGUCccGGCCg-CCaGCGCGUCGcGGa -3'
miRNA:   3'- cUGCCAG--UCGGgaGGgCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 46574 0.66 0.562704
Target:  5'- -cCGGagGGCCCcgggggcaaaCCCGCGCGUcccguuCGGGg -3'
miRNA:   3'- cuGCCagUCGGGa---------GGGCGCGCG------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 51105 0.66 0.562704
Target:  5'- aGAUGG-CgagcgaagAGCCgCcCCCGCGCcgucGCCGGGa -3'
miRNA:   3'- -CUGCCaG--------UCGG-GaGGGCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 82076 0.66 0.562704
Target:  5'- cGCGGcCGGCCCacCCCG-GCGCCu-- -3'
miRNA:   3'- cUGCCaGUCGGGa-GGGCgCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 146991 0.66 0.561765
Target:  5'- cGAgGGUCcGCCuCUugccucggggaccCCCggGCGgGCCGGGg -3'
miRNA:   3'- -CUgCCAGuCGG-GA-------------GGG--CGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24887 0.66 0.553332
Target:  5'- -cUGGUCgccggGGCCCUgggCCCgGCGCuGCCGcGGa -3'
miRNA:   3'- cuGCCAG-----UCGGGA---GGG-CGCG-CGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 31876 0.66 0.553332
Target:  5'- gGGCGG-CGGCCCgCCCccggaagaggcGCGgGUCGGa -3'
miRNA:   3'- -CUGCCaGUCGGGaGGG-----------CGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 76007 0.66 0.553332
Target:  5'- cGGCGGcagGGCCCcgugCCCGCcCGCCcuGGGc -3'
miRNA:   3'- -CUGCCag-UCGGGa---GGGCGcGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 109432 0.66 0.553332
Target:  5'- -cCGG-CGGCCCgCCUGCG-GCUGGa -3'
miRNA:   3'- cuGCCaGUCGGGaGGGCGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 3508 0.66 0.553332
Target:  5'- cACGG-CGGCCg-CCaCGUGCGCCaGGc -3'
miRNA:   3'- cUGCCaGUCGGgaGG-GCGCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 24021 0.66 0.553332
Target:  5'- cGAUGGggUGGCUCcagaaCCCGCGCGuggcgcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCGGGa----GGGCGCGC------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 101781 0.66 0.553332
Target:  5'- uGGCGuuaacuaaGGCCCggCCUcCGCGCCGGGc -3'
miRNA:   3'- -CUGCcag-----UCGGGa-GGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 47406 0.66 0.550529
Target:  5'- cGugGGUUAcgcaggcccucgcuGCUCUCCCGUacccCGCCGGu -3'
miRNA:   3'- -CugCCAGU--------------CGGGAGGGCGc---GCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 150138 0.66 0.544007
Target:  5'- cGCGG--GGCCCgaguccgaCCCGCGCcucuuCCGGGg -3'
miRNA:   3'- cUGCCagUCGGGa-------GGGCGCGc----GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 111602 0.66 0.544007
Target:  5'- cGGCGGggCGG-CCUCCUGgaGCcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCgGGAGGGCg-CGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 40142 0.66 0.543077
Target:  5'- uGGCGGgu-GUCCUCCgagggggCGCGUGUCGGa -3'
miRNA:   3'- -CUGCCaguCGGGAGG-------GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 111783 0.66 0.542147
Target:  5'- cGCGGgu-GCCCgugaucacgacaUCCGUGCGCCGGu -3'
miRNA:   3'- cUGCCaguCGGGa-----------GGGCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 80324 0.66 0.534733
Target:  5'- uGGCGcUCGGCCUUggagcucgggaCCCa-GCGCCGGGa -3'
miRNA:   3'- -CUGCcAGUCGGGA-----------GGGcgCGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.