Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5232 | 3' | -59.5 | NC_001798.1 | + | 23948 | 0.66 | 0.752832 |
Target: 5'- gGCGCCgAGCUggGCGAc-GCGGCGc- -3' miRNA: 3'- -UGUGGgUCGAgaCGCUucCGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 113636 | 0.66 | 0.752832 |
Target: 5'- cGCGgCCGGCgccgccaUGUGGGuGGCGGCGg- -3' miRNA: 3'- -UGUgGGUCGag-----ACGCUU-CCGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 93141 | 0.66 | 0.743253 |
Target: 5'- aGCGCCUGGcCUCgGUGAuGGCgGGCGa- -3' miRNA: 3'- -UGUGGGUC-GAGaCGCUuCCG-CCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 91635 | 0.66 | 0.743253 |
Target: 5'- cCGCCCGGgUgaGCGugacgucaAAGGgGGCGUGg -3' miRNA: 3'- uGUGGGUCgAgaCGC--------UUCCgCCGCAU- -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 59151 | 0.66 | 0.743253 |
Target: 5'- gGCACCCAcGCag-GCG-AGGCGGgGg- -3' miRNA: 3'- -UGUGGGU-CGagaCGCuUCCGCCgCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 125706 | 0.66 | 0.743253 |
Target: 5'- gACGUCgGGCgcgcGCGggGGCGGCGa- -3' miRNA: 3'- -UGUGGgUCGaga-CGCuuCCGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 2499 | 0.66 | 0.733579 |
Target: 5'- aGCGCCgcggggcgCGGCggCcGCGgcGGCGGCGUc -3' miRNA: 3'- -UGUGG--------GUCGa-GaCGCuuCCGCCGCAu -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 57026 | 0.66 | 0.733579 |
Target: 5'- cGCACCCAGgUCccguacGCGGacGGGCGGUc-- -3' miRNA: 3'- -UGUGGGUCgAGa-----CGCU--UCCGCCGcau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 1479 | 0.66 | 0.733579 |
Target: 5'- cGCGCCgGGCgccaugGCGucgcccgcgcccGAGGCGGCGg- -3' miRNA: 3'- -UGUGGgUCGaga---CGC------------UUCCGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 144300 | 0.66 | 0.717924 |
Target: 5'- -gGCCCAGUccaggggcacggaagUCgGCaGGGGCGGCGUc -3' miRNA: 3'- ugUGGGUCG---------------AGaCGcUUCCGCCGCAu -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 96023 | 0.66 | 0.71398 |
Target: 5'- gGCACaCCGGCgggGCGGgcGGGCgGGCGa- -3' miRNA: 3'- -UGUG-GGUCGagaCGCU--UCCG-CCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 9968 | 0.66 | 0.71398 |
Target: 5'- aACAgCCGGCguaCUGCGGaccgccAGGCGGUa-- -3' miRNA: 3'- -UGUgGGUCGa--GACGCU------UCCGCCGcau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 91262 | 0.66 | 0.71398 |
Target: 5'- uCugCCGGCg--GC-AAGGCGGCGg- -3' miRNA: 3'- uGugGGUCGagaCGcUUCCGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 80539 | 0.66 | 0.704073 |
Target: 5'- gACGCUCGGCcCgGCGggGG-GGCGc- -3' miRNA: 3'- -UGUGGGUCGaGaCGCuuCCgCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 70317 | 0.66 | 0.704073 |
Target: 5'- gGCGgUCGGCcCgGCGGAGGCgcgGGCGUGc -3' miRNA: 3'- -UGUgGGUCGaGaCGCUUCCG---CCGCAU- -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 25489 | 0.66 | 0.704073 |
Target: 5'- cGCGCCUcgGGCccgCUGCGccGcGCGGCGg- -3' miRNA: 3'- -UGUGGG--UCGa--GACGCuuC-CGCCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 131036 | 0.67 | 0.691106 |
Target: 5'- cGCAUCCAGCgcgcgCUcguagcGCGAGGucaccgcgcccaccGCGGCGUAc -3' miRNA: 3'- -UGUGGGUCGa----GA------CGCUUC--------------CGCCGCAU- -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 95439 | 0.67 | 0.684089 |
Target: 5'- cGCACCCAGCagCUGCaGAucgaggacuGGCuGGCGc- -3' miRNA: 3'- -UGUGGGUCGa-GACG-CUu--------CCG-CCGCau -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 128509 | 0.67 | 0.67403 |
Target: 5'- gACGCCCAGUcgUCgGCGGugauguucGGGCGG-GUGa -3' miRNA: 3'- -UGUGGGUCG--AGaCGCU--------UCCGCCgCAU- -5' |
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5232 | 3' | -59.5 | NC_001798.1 | + | 46516 | 0.67 | 0.67403 |
Target: 5'- -aGCUCGGCUCgGUGAGGGuCGGgGg- -3' miRNA: 3'- ugUGGGUCGAGaCGCUUCC-GCCgCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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