miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 3' -59.5 NC_001798.1 + 113636 0.66 0.752832
Target:  5'- cGCGgCCGGCgccgccaUGUGGGuGGCGGCGg- -3'
miRNA:   3'- -UGUgGGUCGag-----ACGCUU-CCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 23948 0.66 0.752832
Target:  5'- gGCGCCgAGCUggGCGAc-GCGGCGc- -3'
miRNA:   3'- -UGUGGgUCGAgaCGCUucCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 125706 0.66 0.743253
Target:  5'- gACGUCgGGCgcgcGCGggGGCGGCGa- -3'
miRNA:   3'- -UGUGGgUCGaga-CGCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 59151 0.66 0.743253
Target:  5'- gGCACCCAcGCag-GCG-AGGCGGgGg- -3'
miRNA:   3'- -UGUGGGU-CGagaCGCuUCCGCCgCau -5'
5232 3' -59.5 NC_001798.1 + 91635 0.66 0.743253
Target:  5'- cCGCCCGGgUgaGCGugacgucaAAGGgGGCGUGg -3'
miRNA:   3'- uGUGGGUCgAgaCGC--------UUCCgCCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 93141 0.66 0.743253
Target:  5'- aGCGCCUGGcCUCgGUGAuGGCgGGCGa- -3'
miRNA:   3'- -UGUGGGUC-GAGaCGCUuCCG-CCGCau -5'
5232 3' -59.5 NC_001798.1 + 2499 0.66 0.733579
Target:  5'- aGCGCCgcggggcgCGGCggCcGCGgcGGCGGCGUc -3'
miRNA:   3'- -UGUGG--------GUCGa-GaCGCuuCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 57026 0.66 0.733579
Target:  5'- cGCACCCAGgUCccguacGCGGacGGGCGGUc-- -3'
miRNA:   3'- -UGUGGGUCgAGa-----CGCU--UCCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 1479 0.66 0.733579
Target:  5'- cGCGCCgGGCgccaugGCGucgcccgcgcccGAGGCGGCGg- -3'
miRNA:   3'- -UGUGGgUCGaga---CGC------------UUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 144300 0.66 0.717924
Target:  5'- -gGCCCAGUccaggggcacggaagUCgGCaGGGGCGGCGUc -3'
miRNA:   3'- ugUGGGUCG---------------AGaCGcUUCCGCCGCAu -5'
5232 3' -59.5 NC_001798.1 + 9968 0.66 0.71398
Target:  5'- aACAgCCGGCguaCUGCGGaccgccAGGCGGUa-- -3'
miRNA:   3'- -UGUgGGUCGa--GACGCU------UCCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 91262 0.66 0.71398
Target:  5'- uCugCCGGCg--GC-AAGGCGGCGg- -3'
miRNA:   3'- uGugGGUCGagaCGcUUCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 96023 0.66 0.71398
Target:  5'- gGCACaCCGGCgggGCGGgcGGGCgGGCGa- -3'
miRNA:   3'- -UGUG-GGUCGagaCGCU--UCCG-CCGCau -5'
5232 3' -59.5 NC_001798.1 + 80539 0.66 0.704073
Target:  5'- gACGCUCGGCcCgGCGggGG-GGCGc- -3'
miRNA:   3'- -UGUGGGUCGaGaCGCuuCCgCCGCau -5'
5232 3' -59.5 NC_001798.1 + 70317 0.66 0.704073
Target:  5'- gGCGgUCGGCcCgGCGGAGGCgcgGGCGUGc -3'
miRNA:   3'- -UGUgGGUCGaGaCGCUUCCG---CCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 25489 0.66 0.704073
Target:  5'- cGCGCCUcgGGCccgCUGCGccGcGCGGCGg- -3'
miRNA:   3'- -UGUGGG--UCGa--GACGCuuC-CGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 131036 0.67 0.691106
Target:  5'- cGCAUCCAGCgcgcgCUcguagcGCGAGGucaccgcgcccaccGCGGCGUAc -3'
miRNA:   3'- -UGUGGGUCGa----GA------CGCUUC--------------CGCCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 95439 0.67 0.684089
Target:  5'- cGCACCCAGCagCUGCaGAucgaggacuGGCuGGCGc- -3'
miRNA:   3'- -UGUGGGUCGa-GACG-CUu--------CCG-CCGCau -5'
5232 3' -59.5 NC_001798.1 + 128509 0.67 0.67403
Target:  5'- gACGCCCAGUcgUCgGCGGugauguucGGGCGG-GUGa -3'
miRNA:   3'- -UGUGGGUCG--AGaCGCU--------UCCGCCgCAU- -5'
5232 3' -59.5 NC_001798.1 + 46516 0.67 0.67403
Target:  5'- -aGCUCGGCUCgGUGAGGGuCGGgGg- -3'
miRNA:   3'- ugUGGGUCGAGaCGCUUCC-GCCgCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.