Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5232 | 5' | -63.1 | NC_001798.1 | + | 47523 | 0.66 | 0.624698 |
Target: 5'- ---cGGGCGUCCCCGguGucUCCGa-- -3' miRNA: 3'- ccauCCCGCGGGGGCguCu-AGGCcga -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 98496 | 0.66 | 0.614962 |
Target: 5'- cGGgcGGcgggagcgacGCGCCCCCGUAGGcCCGccauGCg -3' miRNA: 3'- -CCauCC----------CGCGGGGGCGUCUaGGC----CGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 46318 | 0.66 | 0.614962 |
Target: 5'- aGgcGGGCGCCUCgugcaCGCAGucgCCGuGCUc -3' miRNA: 3'- cCauCCCGCGGGG-----GCGUCua-GGC-CGA- -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 121301 | 0.66 | 0.614962 |
Target: 5'- cGGUGGGGCGgCCgCGaacuUCCGGg- -3' miRNA: 3'- -CCAUCCCGCgGGgGCgucuAGGCCga -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 106743 | 0.66 | 0.613989 |
Target: 5'- --cAGGGgGCCuccggagCCCGCggGGAUCCGGa- -3' miRNA: 3'- ccaUCCCgCGG-------GGGCG--UCUAGGCCga -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 96525 | 0.66 | 0.613989 |
Target: 5'- gGGUcuGGCccgaCCCUguccguaccaccaGCAGAUCCGGCUg -3' miRNA: 3'- -CCAucCCGcg--GGGG-------------CGUCUAGGCCGA- -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 47927 | 0.66 | 0.613989 |
Target: 5'- --cGGGGCGCCUaaggccuCCGCGaccCCGGCg -3' miRNA: 3'- ccaUCCCGCGGG-------GGCGUcuaGGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 32361 | 0.66 | 0.605238 |
Target: 5'- cGG-AGGGCGgCCCCGagccCGGGgcccgcgacCCGGCg -3' miRNA: 3'- -CCaUCCCGCgGGGGC----GUCUa--------GGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 49772 | 0.66 | 0.605238 |
Target: 5'- --cGGGGaGUUCCCGUGGAggcCCGGCg -3' miRNA: 3'- ccaUCCCgCGGGGGCGUCUa--GGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 9525 | 0.66 | 0.595531 |
Target: 5'- aGUGGGGC-CCgUCGCcGAggcCCGGCUu -3' miRNA: 3'- cCAUCCCGcGGgGGCGuCUa--GGCCGA- -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 25723 | 0.66 | 0.595531 |
Target: 5'- uGGaccGGCGCCCCCGac-GUCuCGGCg -3' miRNA: 3'- -CCaucCCGCGGGGGCgucUAG-GCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 93494 | 0.66 | 0.588751 |
Target: 5'- gGGUacgaGGGGCGCCCCaCggcgccccucgucgGCGGAacccaggaguucgCCGGCg -3' miRNA: 3'- -CCA----UCCCGCGGGG-G--------------CGUCUa------------GGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 82301 | 0.66 | 0.585849 |
Target: 5'- cGGUuGGGuCGUgCCCGgAGGcCCGGUUg -3' miRNA: 3'- -CCAuCCC-GCGgGGGCgUCUaGGCCGA- -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 15213 | 0.66 | 0.585849 |
Target: 5'- cGG-GGGGaGCgUCCGCGGGUCCGuGUg -3' miRNA: 3'- -CCaUCCCgCGgGGGCGUCUAGGC-CGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 17932 | 0.66 | 0.584883 |
Target: 5'- --cGGGGUgaaccccgugGCCCCCaccuuacccguucGCAGGUCCGGaCg -3' miRNA: 3'- ccaUCCCG----------CGGGGG-------------CGUCUAGGCC-Ga -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 15264 | 0.66 | 0.580054 |
Target: 5'- gGGUAcGGGCgguGCCCCggguuccgggcguggCGguGGUCgCGGCg -3' miRNA: 3'- -CCAU-CCCG---CGGGG---------------GCguCUAG-GCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 35812 | 0.66 | 0.576198 |
Target: 5'- gGGgggGGGGCGUCgggaCUCGCGGAgggCCGGa- -3' miRNA: 3'- -CCa--UCCCGCGG----GGGCGUCUa--GGCCga -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 1730 | 0.66 | 0.576198 |
Target: 5'- cGGUGcGGCGCagguCCCGCGccgCCGGCc -3' miRNA: 3'- -CCAUcCCGCGg---GGGCGUcuaGGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 73242 | 0.67 | 0.570424 |
Target: 5'- cGGcccGGGgGCCCCCGgGGAccuggaggcccaagaUgCCGGCg -3' miRNA: 3'- -CCau-CCCgCGGGGGCgUCU---------------A-GGCCGa -5' |
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5232 | 5' | -63.1 | NC_001798.1 | + | 57172 | 0.67 | 0.566582 |
Target: 5'- cGGgccGGCGCCCuCCGCccAGAUCaCGuGCg -3' miRNA: 3'- -CCaucCCGCGGG-GGCG--UCUAG-GC-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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