miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 47523 0.66 0.624698
Target:  5'- ---cGGGCGUCCCCGguGucUCCGa-- -3'
miRNA:   3'- ccauCCCGCGGGGGCguCu-AGGCcga -5'
5232 5' -63.1 NC_001798.1 + 98496 0.66 0.614962
Target:  5'- cGGgcGGcgggagcgacGCGCCCCCGUAGGcCCGccauGCg -3'
miRNA:   3'- -CCauCC----------CGCGGGGGCGUCUaGGC----CGa -5'
5232 5' -63.1 NC_001798.1 + 46318 0.66 0.614962
Target:  5'- aGgcGGGCGCCUCgugcaCGCAGucgCCGuGCUc -3'
miRNA:   3'- cCauCCCGCGGGG-----GCGUCua-GGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 121301 0.66 0.614962
Target:  5'- cGGUGGGGCGgCCgCGaacuUCCGGg- -3'
miRNA:   3'- -CCAUCCCGCgGGgGCgucuAGGCCga -5'
5232 5' -63.1 NC_001798.1 + 47927 0.66 0.613989
Target:  5'- --cGGGGCGCCUaaggccuCCGCGaccCCGGCg -3'
miRNA:   3'- ccaUCCCGCGGG-------GGCGUcuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 96525 0.66 0.613989
Target:  5'- gGGUcuGGCccgaCCCUguccguaccaccaGCAGAUCCGGCUg -3'
miRNA:   3'- -CCAucCCGcg--GGGG-------------CGUCUAGGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 106743 0.66 0.613989
Target:  5'- --cAGGGgGCCuccggagCCCGCggGGAUCCGGa- -3'
miRNA:   3'- ccaUCCCgCGG-------GGGCG--UCUAGGCCga -5'
5232 5' -63.1 NC_001798.1 + 32361 0.66 0.605238
Target:  5'- cGG-AGGGCGgCCCCGagccCGGGgcccgcgacCCGGCg -3'
miRNA:   3'- -CCaUCCCGCgGGGGC----GUCUa--------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 49772 0.66 0.605238
Target:  5'- --cGGGGaGUUCCCGUGGAggcCCGGCg -3'
miRNA:   3'- ccaUCCCgCGGGGGCGUCUa--GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 9525 0.66 0.595531
Target:  5'- aGUGGGGC-CCgUCGCcGAggcCCGGCUu -3'
miRNA:   3'- cCAUCCCGcGGgGGCGuCUa--GGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 25723 0.66 0.595531
Target:  5'- uGGaccGGCGCCCCCGac-GUCuCGGCg -3'
miRNA:   3'- -CCaucCCGCGGGGGCgucUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 93494 0.66 0.588751
Target:  5'- gGGUacgaGGGGCGCCCCaCggcgccccucgucgGCGGAacccaggaguucgCCGGCg -3'
miRNA:   3'- -CCA----UCCCGCGGGG-G--------------CGUCUa------------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 82301 0.66 0.585849
Target:  5'- cGGUuGGGuCGUgCCCGgAGGcCCGGUUg -3'
miRNA:   3'- -CCAuCCC-GCGgGGGCgUCUaGGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 15213 0.66 0.585849
Target:  5'- cGG-GGGGaGCgUCCGCGGGUCCGuGUg -3'
miRNA:   3'- -CCaUCCCgCGgGGGCGUCUAGGC-CGa -5'
5232 5' -63.1 NC_001798.1 + 17932 0.66 0.584883
Target:  5'- --cGGGGUgaaccccgugGCCCCCaccuuacccguucGCAGGUCCGGaCg -3'
miRNA:   3'- ccaUCCCG----------CGGGGG-------------CGUCUAGGCC-Ga -5'
5232 5' -63.1 NC_001798.1 + 15264 0.66 0.580054
Target:  5'- gGGUAcGGGCgguGCCCCggguuccgggcguggCGguGGUCgCGGCg -3'
miRNA:   3'- -CCAU-CCCG---CGGGG---------------GCguCUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 35812 0.66 0.576198
Target:  5'- gGGgggGGGGCGUCgggaCUCGCGGAgggCCGGa- -3'
miRNA:   3'- -CCa--UCCCGCGG----GGGCGUCUa--GGCCga -5'
5232 5' -63.1 NC_001798.1 + 1730 0.66 0.576198
Target:  5'- cGGUGcGGCGCagguCCCGCGccgCCGGCc -3'
miRNA:   3'- -CCAUcCCGCGg---GGGCGUcuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 73242 0.67 0.570424
Target:  5'- cGGcccGGGgGCCCCCGgGGAccuggaggcccaagaUgCCGGCg -3'
miRNA:   3'- -CCau-CCCgCGGGGGCgUCU---------------A-GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 39602 0.67 0.566582
Target:  5'- uGGUuguGGGCGUUUCUGgAGAcgcgCCGGCg -3'
miRNA:   3'- -CCAu--CCCGCGGGGGCgUCUa---GGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.