miRNA display CGI


Results 21 - 40 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5234 3' -56.6 NC_001798.1 + 140190 0.68 0.787505
Target:  5'- cGGGcCGcCugCGGCCggugcuggugugcGugGggUCGCCg -3'
miRNA:   3'- uUCCuGC-GugGCCGG-------------CugCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 139291 0.66 0.885012
Target:  5'- cGGGGGCGCAuaGcGCCG-CG--UCGCCg -3'
miRNA:   3'- -UUCCUGCGUggC-CGGCuGCuuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 138271 0.66 0.898295
Target:  5'- uAGGcGCGUACCGuGUCGuuGAuGUCGCCc -3'
miRNA:   3'- uUCC-UGCGUGGC-CGGCugCU-UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 137989 0.66 0.885012
Target:  5'- -uGGGCGCGCCGcaGCUcGCGGucgcgCGCCu -3'
miRNA:   3'- uuCCUGCGUGGC--CGGcUGCUua---GUGG- -5'
5234 3' -56.6 NC_001798.1 + 137169 0.69 0.760619
Target:  5'- cAGGACGCuggucgcgguaaACCgcGGCUGGCG-AUCGCUg -3'
miRNA:   3'- uUCCUGCG------------UGG--CCGGCUGCuUAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 135494 0.66 0.898295
Target:  5'- cGGGGACGCggacGCCGcGCaCGGCGcGAUCcaggacgcccGCCg -3'
miRNA:   3'- -UUCCUGCG----UGGC-CG-GCUGC-UUAG----------UGG- -5'
5234 3' -56.6 NC_001798.1 + 135274 0.67 0.84004
Target:  5'- -uGGACGCGCUGG-UGGCGGc-CGCCc -3'
miRNA:   3'- uuCCUGCGUGGCCgGCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 134482 0.69 0.722035
Target:  5'- -uGGGCGCGCCuGGCCGccauucGCGAca-GCCc -3'
miRNA:   3'- uuCCUGCGUGG-CCGGC------UGCUuagUGG- -5'
5234 3' -56.6 NC_001798.1 + 134368 0.67 0.846453
Target:  5'- uGGGGCcCGCCGGCCGcuccucgCGCCg -3'
miRNA:   3'- uUCCUGcGUGGCCGGCugcuua-GUGG- -5'
5234 3' -56.6 NC_001798.1 + 133022 0.75 0.411004
Target:  5'- -cGGAcguCGCGCCGGCCGAgGuGGUCGCg -3'
miRNA:   3'- uuCCU---GCGUGGCCGGCUgC-UUAGUGg -5'
5234 3' -56.6 NC_001798.1 + 132668 0.68 0.797412
Target:  5'- aAAGGGCGCugCGacgcgucgcacGCCGACGcggCGCa -3'
miRNA:   3'- -UUCCUGCGugGC-----------CGGCUGCuuaGUGg -5'
5234 3' -56.6 NC_001798.1 + 132214 0.77 0.337523
Target:  5'- gGAGG-CGCGCCuGGCCGGCGGagauaacGUCugCa -3'
miRNA:   3'- -UUCCuGCGUGG-CCGGCUGCU-------UAGugG- -5'
5234 3' -56.6 NC_001798.1 + 132131 0.66 0.903976
Target:  5'- cAGGcggcccuGCGCcgccggggGCCGGCgGGCGGggCGCCc -3'
miRNA:   3'- uUCC-------UGCG--------UGGCCGgCUGCUuaGUGG- -5'
5234 3' -56.6 NC_001798.1 + 131278 0.67 0.848037
Target:  5'- --cGACGCAgaUGGCCGAgaCGAugaacGUCGCCa -3'
miRNA:   3'- uucCUGCGUg-GCCGGCU--GCU-----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 130763 0.66 0.878038
Target:  5'- ----cCGCACCGGaCCGACGAuacgauggugcGUCggcGCCg -3'
miRNA:   3'- uuccuGCGUGGCC-GGCUGCU-----------UAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 128867 0.66 0.898295
Target:  5'- cGAGGAC-CugaUGGCgCGGCGA-UCGCCg -3'
miRNA:   3'- -UUCCUGcGug-GCCG-GCUGCUuAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 128300 0.66 0.884324
Target:  5'- --uGACGCGCCGcgcccccccguccGCCGcCGAagccGUCGCCc -3'
miRNA:   3'- uucCUGCGUGGC-------------CGGCuGCU----UAGUGG- -5'
5234 3' -56.6 NC_001798.1 + 127010 0.69 0.770007
Target:  5'- -cGGACGCGgugucgcuCCGGCCGGCc-GUCcugGCCg -3'
miRNA:   3'- uuCCUGCGU--------GGCCGGCUGcuUAG---UGG- -5'
5234 3' -56.6 NC_001798.1 + 125711 0.66 0.878038
Target:  5'- -cGGGCGCGCgCGGgggCGGCGAGaugaGCCg -3'
miRNA:   3'- uuCCUGCGUG-GCCg--GCUGCUUag--UGG- -5'
5234 3' -56.6 NC_001798.1 + 124817 0.69 0.760619
Target:  5'- gAAGGACGCGagcgaCaGCgCGAUGAGgggCACCa -3'
miRNA:   3'- -UUCCUGCGUg----GcCG-GCUGCUUa--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.