miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5237 5' -58.5 NC_001798.1 + 25493 0.66 0.862571
Target:  5'- cCUCGGGcccgcUGCgccgcgcggcggccuGGAUGCGcCAGGUGcccGACCc -3'
miRNA:   3'- -GGGCCC-----AUG---------------CCUACGC-GUCCAC---CUGG- -5'
5237 5' -58.5 NC_001798.1 + 108028 0.66 0.859623
Target:  5'- cUCCGaGGUGCGGAgccucuuuggGcCGUGGGUacGGACa -3'
miRNA:   3'- -GGGC-CCAUGCCUa---------C-GCGUCCA--CCUGg -5'
5237 5' -58.5 NC_001798.1 + 71092 0.66 0.859623
Target:  5'- gCCCGcGGU-CGGcGUGCGCGcccccGG-GGACg -3'
miRNA:   3'- -GGGC-CCAuGCC-UACGCGU-----CCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 6546 0.66 0.859623
Target:  5'- gCCGGGgggACGGGgggacggGC-CGGGgGGACg -3'
miRNA:   3'- gGGCCCa--UGCCUa------CGcGUCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 94998 0.66 0.859623
Target:  5'- gCCUGGGccccgcAgGGcgGCGCGGGccUGGagGCCg -3'
miRNA:   3'- -GGGCCCa-----UgCCuaCGCGUCC--ACC--UGG- -5'
5237 5' -58.5 NC_001798.1 + 132369 0.66 0.858882
Target:  5'- aCCGGGUggucaucuacacaACGGu--CGUgacGGUGGGCCu -3'
miRNA:   3'- gGGCCCA-------------UGCCuacGCGu--CCACCUGG- -5'
5237 5' -58.5 NC_001798.1 + 152679 0.66 0.855144
Target:  5'- cCCCGGGgaaaaauucuuagcaUACuaGGAaGCcCAGG-GGACCa -3'
miRNA:   3'- -GGGCCC---------------AUG--CCUaCGcGUCCaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 149456 0.66 0.85212
Target:  5'- --aGGGUGCGGcgGCuccacGCGGG-GG-CCg -3'
miRNA:   3'- gggCCCAUGCCuaCG-----CGUCCaCCuGG- -5'
5237 5' -58.5 NC_001798.1 + 34 0.66 0.85212
Target:  5'- cCCCGGGggggguguuuuUugGGGggggGCGCgaAGGcGGGCg -3'
miRNA:   3'- -GGGCCC-----------AugCCUa---CGCG--UCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 11656 0.66 0.85212
Target:  5'- cCCCGGGgGCGGggGU-CGGGUcucggggggaGGACg -3'
miRNA:   3'- -GGGCCCaUGCCuaCGcGUCCA----------CCUGg -5'
5237 5' -58.5 NC_001798.1 + 154372 0.66 0.85212
Target:  5'- cCCCGGGggggguguuuuUugGGGggggGCGCgaAGGcGGGCg -3'
miRNA:   3'- -GGGCCC-----------AugCCUa---CGCG--UCCaCCUGg -5'
5237 5' -58.5 NC_001798.1 + 108581 0.66 0.851359
Target:  5'- gCCUGGGUaacauucGCGGccGCGCc---GGACCg -3'
miRNA:   3'- -GGGCCCA-------UGCCuaCGCGuccaCCUGG- -5'
5237 5' -58.5 NC_001798.1 + 154270 0.66 0.84443
Target:  5'- uCCCGGc--UGGcGUGCGCAGcccGGGCCg -3'
miRNA:   3'- -GGGCCcauGCC-UACGCGUCca-CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 9659 0.66 0.84443
Target:  5'- -gCGGGccgcgcGCGGAggGCGCGGGaugggGGGCUc -3'
miRNA:   3'- ggGCCCa-----UGCCUa-CGCGUCCa----CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 3666 0.66 0.84443
Target:  5'- cCCCGGGcGCcac-GCGCGGGUucuGGAgCCa -3'
miRNA:   3'- -GGGCCCaUGccuaCGCGUCCA---CCU-GG- -5'
5237 5' -58.5 NC_001798.1 + 126350 0.66 0.84443
Target:  5'- uUCCGGGaGCGGcuucGCGCGGGacUGucCCg -3'
miRNA:   3'- -GGGCCCaUGCCua--CGCGUCC--ACcuGG- -5'
5237 5' -58.5 NC_001798.1 + 95295 0.66 0.842087
Target:  5'- gCCGGGUuuGuGUGCGCggcgucgagucucgGGGgcgGGGCCc -3'
miRNA:   3'- gGGCCCAugCcUACGCG--------------UCCa--CCUGG- -5'
5237 5' -58.5 NC_001798.1 + 21494 0.66 0.842087
Target:  5'- cCCCGGGUcACcguaccugcgauaaGGcUGCaGUGGGUGGAUg -3'
miRNA:   3'- -GGGCCCA-UG--------------CCuACG-CGUCCACCUGg -5'
5237 5' -58.5 NC_001798.1 + 39419 0.66 0.83656
Target:  5'- aCCGGGgcGCGGccguccgcGUGCGgGGGggucagGGACa -3'
miRNA:   3'- gGGCCCa-UGCC--------UACGCgUCCa-----CCUGg -5'
5237 5' -58.5 NC_001798.1 + 30162 0.66 0.83656
Target:  5'- gCCgGGGUgagggagggacACGGGggacacgGCGCGGG-GGuCCc -3'
miRNA:   3'- -GGgCCCA-----------UGCCUa------CGCGUCCaCCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.