Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5240 | 5' | -59.4 | NC_001798.1 | + | 25986 | 0.66 | 0.758645 |
Target: 5'- -cGCCGCaccgUGC-UGGCCUCcGGCCgCGUg -3' miRNA: 3'- ucUGGUG----ACGaACCGGAGcUCGG-GCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 27865 | 0.66 | 0.758645 |
Target: 5'- cGACgCGCUccgGCUccgGGCCUacgcCGAGCCCa- -3' miRNA: 3'- uCUG-GUGA---CGAa--CCGGA----GCUCGGGca -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 25866 | 0.66 | 0.758645 |
Target: 5'- cGugCGCgccGCggacUGGCCcgccgaCGGGCCCGUg -3' miRNA: 3'- uCugGUGa--CGa---ACCGGa-----GCUCGGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 113994 | 0.66 | 0.758645 |
Target: 5'- uGugCGggagggGCUUGGCCUuccCGAGCUCGg -3' miRNA: 3'- uCugGUga----CGAACCGGA---GCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 106734 | 0.66 | 0.74919 |
Target: 5'- -aGCCAUcGCcagggGGCCUCcgGAGCCCGc -3' miRNA: 3'- ucUGGUGaCGaa---CCGGAG--CUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 97215 | 0.66 | 0.74919 |
Target: 5'- gAGACCGCcGCggUGGCCgUgGAGCUgGc -3' miRNA: 3'- -UCUGGUGaCGa-ACCGG-AgCUCGGgCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 25324 | 0.66 | 0.739634 |
Target: 5'- gAGGCCuACUGCgccccgcgGGCCguggcCGAGCUCa- -3' miRNA: 3'- -UCUGG-UGACGaa------CCGGa----GCUCGGGca -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 122226 | 0.66 | 0.739634 |
Target: 5'- uGGACCGCgggugggaaGCUcUGGCCggcggCGAccgGCCCGa -3' miRNA: 3'- -UCUGGUGa--------CGA-ACCGGa----GCU---CGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 92941 | 0.66 | 0.729988 |
Target: 5'- cGGGcCCGCcGCcgUGGCCcugCGuGCCCGg -3' miRNA: 3'- -UCU-GGUGaCGa-ACCGGa--GCuCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 24069 | 0.67 | 0.710457 |
Target: 5'- uGGACCAggcCUGCUUccGGaUCUCGGGCgCGg -3' miRNA: 3'- -UCUGGU---GACGAA--CC-GGAGCUCGgGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 66231 | 0.67 | 0.710457 |
Target: 5'- aGGAUCAUUaGCUgGGCCUCGuGUUCGc -3' miRNA: 3'- -UCUGGUGA-CGAaCCGGAGCuCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 125077 | 0.67 | 0.709473 |
Target: 5'- uGGCCACguccacCUUGGCCcguuucuUCGgggGGCCCGUa -3' miRNA: 3'- uCUGGUGac----GAACCGG-------AGC---UCGGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 127306 | 0.67 | 0.69762 |
Target: 5'- cAGACgcugcuggaGCUGCUgguuagcguguacgUGGCCcCGAGCCUGg -3' miRNA: 3'- -UCUGg--------UGACGA--------------ACCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 23032 | 0.67 | 0.690669 |
Target: 5'- uGGCC-CUGC-UGGCCUCGAugguggacgaGgCCGUu -3' miRNA: 3'- uCUGGuGACGaACCGGAGCU----------CgGGCA- -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 74651 | 0.67 | 0.684692 |
Target: 5'- gAGGCCccccggggGGCCUCGGGCCCa- -3' miRNA: 3'- -UCUGGugacgaa-CCGGAGCUCGGGca -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 59286 | 0.67 | 0.670691 |
Target: 5'- uGAa-GCUGCgaagGGCCcCGGGCCCGc -3' miRNA: 3'- uCUggUGACGaa--CCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 153216 | 0.68 | 0.660652 |
Target: 5'- uAGACCGCccgacGGCC-CGGGCCCGc -3' miRNA: 3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 32354 | 0.68 | 0.660652 |
Target: 5'- -cGCCAC-GCggagggcGGCCcCGAGCCCGg -3' miRNA: 3'- ucUGGUGaCGaa-----CCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 150133 | 0.68 | 0.650591 |
Target: 5'- gAGGCCGCgg---GGCC-CGAGUCCGa -3' miRNA: 3'- -UCUGGUGacgaaCCGGaGCUCGGGCa -5' |
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5240 | 5' | -59.4 | NC_001798.1 | + | 72144 | 0.68 | 0.630434 |
Target: 5'- cGGCCACccggGCc-GGCgUCGGGCCCa- -3' miRNA: 3'- uCUGGUGa---CGaaCCGgAGCUCGGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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