miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5241 3' -58.4 NC_001798.1 + 59540 0.66 0.847685
Target:  5'- --gGGACcccGGAAGGCGGAgaGGGGg- -3'
miRNA:   3'- gcaCCUGc--UCUUCCGCCUggUCCCac -5'
5241 3' -58.4 NC_001798.1 + 36267 0.66 0.839808
Target:  5'- uGUGGAcccCGGGGugggcGGCGGGggGGGGUGc -3'
miRNA:   3'- gCACCU---GCUCUu----CCGCCUggUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 20949 0.66 0.839808
Target:  5'- uCGUGu-UGAGGcGGGCGGGuCCGGGGg- -3'
miRNA:   3'- -GCACcuGCUCU-UCCGCCU-GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 33390 0.66 0.839808
Target:  5'- gGUGGGCaggaguGGGAGGGCGccuGGCuCGGGGa- -3'
miRNA:   3'- gCACCUG------CUCUUCCGC---CUG-GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 28171 0.66 0.837409
Target:  5'- aGUGGGCGAacagccccccgagcGAGGGCGGggggaaggcGCCGGaGGc- -3'
miRNA:   3'- gCACCUGCU--------------CUUCCGCC---------UGGUC-CCac -5'
5241 3' -58.4 NC_001798.1 + 23541 0.66 0.831751
Target:  5'- gCGgacGACGAGGAGGCGGgggugcccGCgAGGGc- -3'
miRNA:   3'- -GCac-CUGCUCUUCCGCC--------UGgUCCCac -5'
5241 3' -58.4 NC_001798.1 + 104780 0.66 0.831751
Target:  5'- --aGGuaGCGcGGAGGCGGGCCAGcaGGUc -3'
miRNA:   3'- gcaCC--UGCuCUUCCGCCUGGUC--CCAc -5'
5241 3' -58.4 NC_001798.1 + 125653 0.66 0.831751
Target:  5'- uCGcGGGCGAGGcggGGGCGGcugaggUCAGGGg- -3'
miRNA:   3'- -GCaCCUGCUCU---UCCGCCu-----GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 30150 0.66 0.831751
Target:  5'- ----aGCGGGcGGG-GGGCCGGGGUGa -3'
miRNA:   3'- gcaccUGCUCuUCCgCCUGGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 32538 0.66 0.831751
Target:  5'- uCGUGGACcagacgGGGAAcguGGCGGACCugcugcGGGc- -3'
miRNA:   3'- -GCACCUG------CUCUU---CCGCCUGGu-----CCCac -5'
5241 3' -58.4 NC_001798.1 + 151165 0.66 0.831751
Target:  5'- cCG-GGccACGGGggGGUGGGCgaCAGGGc- -3'
miRNA:   3'- -GCaCC--UGCUCuuCCGCCUG--GUCCCac -5'
5241 3' -58.4 NC_001798.1 + 111656 0.66 0.823521
Target:  5'- ---cGGCGGGggGGCGGAagagacgcUCGGGGa- -3'
miRNA:   3'- gcacCUGCUCuuCCGCCU--------GGUCCCac -5'
5241 3' -58.4 NC_001798.1 + 51069 0.66 0.823521
Target:  5'- aCGUGGACGAcGAcagcgAGGuCGaGGCCGcGGGg- -3'
miRNA:   3'- -GCACCUGCU-CU-----UCC-GC-CUGGU-CCCac -5'
5241 3' -58.4 NC_001798.1 + 30488 0.66 0.815126
Target:  5'- --gGGAuccUGuGggGGUGGGCCcguGGGUGa -3'
miRNA:   3'- gcaCCU---GCuCuuCCGCCUGGu--CCCAC- -5'
5241 3' -58.4 NC_001798.1 + 112477 0.66 0.815126
Target:  5'- gGUGGugGgaGGAGGGUggugggagcaaGGGCUGGcGGUGg -3'
miRNA:   3'- gCACCugC--UCUUCCG-----------CCUGGUC-CCAC- -5'
5241 3' -58.4 NC_001798.1 + 10299 0.66 0.815126
Target:  5'- aCGgggGGACGAcgGggGGgGGGuuGGGGg- -3'
miRNA:   3'- -GCa--CCUGCU--CuuCCgCCUggUCCCac -5'
5241 3' -58.4 NC_001798.1 + 149295 0.66 0.810012
Target:  5'- gGUGGcGCGAccGGAGGCcguGGAaguccagcgcgcccaCCAGGGUGc -3'
miRNA:   3'- gCACC-UGCU--CUUCCG---CCU---------------GGUCCCAC- -5'
5241 3' -58.4 NC_001798.1 + 107848 0.66 0.806572
Target:  5'- uGUGGuguguccauaaGCGcGggGGUucgGGGCCAGGGcUGg -3'
miRNA:   3'- gCACC-----------UGCuCuuCCG---CCUGGUCCC-AC- -5'
5241 3' -58.4 NC_001798.1 + 38802 0.67 0.797867
Target:  5'- aCGcGGuuGGcGAGGCGGGCCAGGaUGa -3'
miRNA:   3'- -GCaCCugCUcUUCCGCCUGGUCCcAC- -5'
5241 3' -58.4 NC_001798.1 + 30978 0.67 0.797867
Target:  5'- gGUcGGGCGGGGgucgggcggGGGuCGGGCgGGGGUc -3'
miRNA:   3'- gCA-CCUGCUCU---------UCC-GCCUGgUCCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.