miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 3' -52.9 NC_001798.1 + 144663 0.65 0.98375
Target:  5'- uGGUGUUgGCagGCCguaaaucgcgucgCCCGAcGCAGCg -3'
miRNA:   3'- gCUAUAGgUGg-CGGa------------GGGCUuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 53583 0.66 0.982589
Target:  5'- -----cCCACCcugCUCCCGAAGCuGCu -3'
miRNA:   3'- gcuauaGGUGGcg-GAGGGCUUUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 104121 0.66 0.982589
Target:  5'- aCGAcaUAUCCACCacgcGCCUCgUCGAcgcCAGUg -3'
miRNA:   3'- -GCU--AUAGGUGG----CGGAG-GGCUuu-GUCG- -5'
5242 3' -52.9 NC_001798.1 + 1337 0.66 0.982589
Target:  5'- -----cCCGCCGCggCCCGc-GCAGCu -3'
miRNA:   3'- gcuauaGGUGGCGgaGGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 85300 0.66 0.982589
Target:  5'- cCGggGUCCGCCcgcgGCCcgCCCGcAGaccccACGGCa -3'
miRNA:   3'- -GCuaUAGGUGG----CGGa-GGGC-UU-----UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 85442 0.66 0.982589
Target:  5'- -----cCUACCGCCUCUCGcccCAGUg -3'
miRNA:   3'- gcuauaGGUGGCGGAGGGCuuuGUCG- -5'
5242 3' -52.9 NC_001798.1 + 4131 0.66 0.982389
Target:  5'- cCGGgg--CGCCGCC-CCCGggGCccucgcgGGCa -3'
miRNA:   3'- -GCUauagGUGGCGGaGGGCuuUG-------UCG- -5'
5242 3' -52.9 NC_001798.1 + 23657 0.66 0.980516
Target:  5'- gGAg---CGCCGCCgggCCCGc-GCGGCg -3'
miRNA:   3'- gCUauagGUGGCGGa--GGGCuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 57114 0.66 0.980516
Target:  5'- uGAUGagCCGCUGCCgacccagcggCCCGAcgaccgaguACAGCc -3'
miRNA:   3'- gCUAUa-GGUGGCGGa---------GGGCUu--------UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 17107 0.66 0.980516
Target:  5'- aCGAUuguUCC-CgGCCgCCCGcGAGCGGUa -3'
miRNA:   3'- -GCUAu--AGGuGgCGGaGGGC-UUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 28977 0.66 0.980516
Target:  5'- ----cUCCGcCCGCC-CCagGggGCGGCg -3'
miRNA:   3'- gcuauAGGU-GGCGGaGGg-CuuUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 32592 0.66 0.980516
Target:  5'- gGAg--CCGCCGCacccugCUCCCcGAGCAcGCg -3'
miRNA:   3'- gCUauaGGUGGCG------GAGGGcUUUGU-CG- -5'
5242 3' -52.9 NC_001798.1 + 66663 0.66 0.980516
Target:  5'- -----gCCACCGCCUCCgCGuucucgGGCg -3'
miRNA:   3'- gcuauaGGUGGCGGAGG-GCuuug--UCG- -5'
5242 3' -52.9 NC_001798.1 + 77712 0.66 0.980516
Target:  5'- gCGAgcgCUggGCCGCCggCgUCGAGGCGGCg -3'
miRNA:   3'- -GCUauaGG--UGGCGGa-G-GGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 79671 0.66 0.980516
Target:  5'- ------gCGCUGCUgaugcgUCCCGAGGCGGCc -3'
miRNA:   3'- gcuauagGUGGCGG------AGGGCUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 122463 0.66 0.978265
Target:  5'- aGcUGUCCcCCGCggCCC-AGACGGCg -3'
miRNA:   3'- gCuAUAGGuGGCGgaGGGcUUUGUCG- -5'
5242 3' -52.9 NC_001798.1 + 23611 0.66 0.978265
Target:  5'- cCGAgc-CCGCC-CCggCCCGGAcccccGCGGCg -3'
miRNA:   3'- -GCUauaGGUGGcGGa-GGGCUU-----UGUCG- -5'
5242 3' -52.9 NC_001798.1 + 83928 0.66 0.978265
Target:  5'- -----aCCACCGCCccguagucaUCCUGGGACcGCc -3'
miRNA:   3'- gcuauaGGUGGCGG---------AGGGCUUUGuCG- -5'
5242 3' -52.9 NC_001798.1 + 87975 0.66 0.978265
Target:  5'- gCGGgg-CUuggACgCGCCUCCCGggGgguCGGCa -3'
miRNA:   3'- -GCUauaGG---UG-GCGGAGGGCuuU---GUCG- -5'
5242 3' -52.9 NC_001798.1 + 53208 0.66 0.978265
Target:  5'- gGGUGUCUGCUcCCcacCCCGGAGgGGCu -3'
miRNA:   3'- gCUAUAGGUGGcGGa--GGGCUUUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.