miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5242 5' -63.8 NC_001798.1 + 75121 0.65 0.604174
Target:  5'- cCGCaGUC-CGGGCagGGCGgcggcgacgacgGGCCCg -3'
miRNA:   3'- cGCGgCGGaGCCCGaaCCGCa-----------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 83355 0.65 0.60321
Target:  5'- gGCGUCGCCcgCgaacauaggcugcgGGGCgaacguguugUUGGCGUGGgucacCCCg -3'
miRNA:   3'- -CGCGGCGGa-G--------------CCCG----------AACCGCACC-----GGG- -5'
5242 5' -63.8 NC_001798.1 + 120179 0.66 0.599355
Target:  5'- cGCGCCGCCgggcggcucgcagUgauagaagaggagcuCGGGCcccgGGCcguUGGCCCc -3'
miRNA:   3'- -CGCGGCGG-------------A---------------GCCCGaa--CCGc--ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 95687 0.66 0.596466
Target:  5'- gGCGgCGgCggGGGCggccGGCGUcGCCCg -3'
miRNA:   3'- -CGCgGCgGagCCCGaa--CCGCAcCGGG- -5'
5242 5' -63.8 NC_001798.1 + 109553 0.66 0.596466
Target:  5'- cCGCgGCCUauGGCgcggUGGCcccgagcgcGGCCCg -3'
miRNA:   3'- cGCGgCGGAgcCCGa---ACCGca-------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 36061 0.66 0.596466
Target:  5'- cGUGCUGCCggaggcugCGGGCgcgggguaggugggUgGGCGgguggugggggggGGCCCg -3'
miRNA:   3'- -CGCGGCGGa-------GCCCGa-------------A-CCGCa------------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 59461 0.66 0.596466
Target:  5'- cCGCgUGCC-CGGGCgcggugaGGCGUucGGCCa -3'
miRNA:   3'- cGCG-GCGGaGCCCGaa-----CCGCA--CCGGg -5'
5242 5' -63.8 NC_001798.1 + 70372 0.66 0.596466
Target:  5'- uGCGCCuugcaccggGCCcaCGGGCUUccggagacGGCGcucuUGGCCg -3'
miRNA:   3'- -CGCGG---------CGGa-GCCCGAA--------CCGC----ACCGGg -5'
5242 5' -63.8 NC_001798.1 + 24711 0.66 0.596466
Target:  5'- cGCGCCcgggGCCcgCGGGCgcGGCc--GCCCc -3'
miRNA:   3'- -CGCGG----CGGa-GCCCGaaCCGcacCGGG- -5'
5242 5' -63.8 NC_001798.1 + 111810 0.66 0.586853
Target:  5'- uGCGCCgGUCgCGGGCguccaggGGC-UGGCgCg -3'
miRNA:   3'- -CGCGG-CGGaGCCCGaa-----CCGcACCGgG- -5'
5242 5' -63.8 NC_001798.1 + 121549 0.66 0.586853
Target:  5'- uGCGCCugGCgUgGGGCccgugGGCGaccUGuGCCCg -3'
miRNA:   3'- -CGCGG--CGgAgCCCGaa---CCGC---AC-CGGG- -5'
5242 5' -63.8 NC_001798.1 + 23840 0.66 0.586853
Target:  5'- cGUGCUGUacggCGGGCUgGGCGacagccGCCCc -3'
miRNA:   3'- -CGCGGCGga--GCCCGAaCCGCac----CGGG- -5'
5242 5' -63.8 NC_001798.1 + 39698 0.66 0.586853
Target:  5'- cGC-CCGCCUCGGGgaUgcGGUGccuUGGUCg -3'
miRNA:   3'- -CGcGGCGGAGCCCgaA--CCGC---ACCGGg -5'
5242 5' -63.8 NC_001798.1 + 18208 0.66 0.582057
Target:  5'- cGCGCaGCCUCgccgggggacgguGGGCgggaagGGUGgaugguuuccgggGGCCCg -3'
miRNA:   3'- -CGCGgCGGAG-------------CCCGaa----CCGCa------------CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 23010 0.66 0.577269
Target:  5'- gGCGUCGUCUCGccgcGGCagcUGGCccugcUGGCCUc -3'
miRNA:   3'- -CGCGGCGGAGC----CCGa--ACCGc----ACCGGG- -5'
5242 5' -63.8 NC_001798.1 + 67559 0.66 0.577269
Target:  5'- uCGCCGCCagGGGg--GGCGaccucgGGCUCc -3'
miRNA:   3'- cGCGGCGGagCCCgaaCCGCa-----CCGGG- -5'
5242 5' -63.8 NC_001798.1 + 127939 0.66 0.577269
Target:  5'- gGCGggGCCcCGGGCgaaaaGGCccGGCCCg -3'
miRNA:   3'- -CGCggCGGaGCCCGaa---CCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 25601 0.66 0.577269
Target:  5'- cGgGCCGCgC-CGGG---GGCG-GGCCCc -3'
miRNA:   3'- -CgCGGCG-GaGCCCgaaCCGCaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 72628 0.66 0.577269
Target:  5'- gGCGCa-CCUCGGGgUaugcgacgagcUGGC--GGCCCa -3'
miRNA:   3'- -CGCGgcGGAGCCCgA-----------ACCGcaCCGGG- -5'
5242 5' -63.8 NC_001798.1 + 73207 0.66 0.577269
Target:  5'- gGCGUguuucgCGCCUCGGcGUUUcGGCcuuccgccGGCCCg -3'
miRNA:   3'- -CGCG------GCGGAGCC-CGAA-CCGca------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.