miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 3' -56.7 NC_001798.1 + 101965 0.66 0.901474
Target:  5'- cCGGAUaGAGGAGGCCccGGgggGGCGa--- -3'
miRNA:   3'- uGCCUG-CUCCUCCGG--UCa--CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 2408 0.66 0.901474
Target:  5'- gGCGGcCGAGGGcgccGGCguGUGGC-UGGGc -3'
miRNA:   3'- -UGCCuGCUCCU----CCGguCACUGcAUCU- -5'
5244 3' -56.7 NC_001798.1 + 14308 0.66 0.901474
Target:  5'- aACGGAUGAGuGGGG--GGUG-CGUGGGg -3'
miRNA:   3'- -UGCCUGCUC-CUCCggUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 111285 0.66 0.900844
Target:  5'- uCGGGCGcGGGAacguacaGGCC-GUGGCGcUGGAu -3'
miRNA:   3'- uGCCUGC-UCCU-------CCGGuCACUGC-AUCU- -5'
5244 3' -56.7 NC_001798.1 + 39467 0.66 0.895072
Target:  5'- aGCGGA-GGGGGGGCCuggcgcGUGccuCGUGGc -3'
miRNA:   3'- -UGCCUgCUCCUCCGGu-----CACu--GCAUCu -5'
5244 3' -56.7 NC_001798.1 + 111898 0.66 0.894419
Target:  5'- cCGGGgGAGGugcgccuGGGCCAGggcgaauACGUAGGg -3'
miRNA:   3'- uGCCUgCUCC-------UCCGGUCac-----UGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 101866 0.66 0.888445
Target:  5'- gGCGGAgGGGGguGGGCguGUG-CGggGGAg -3'
miRNA:   3'- -UGCCUgCUCC--UCCGguCACuGCa-UCU- -5'
5244 3' -56.7 NC_001798.1 + 153553 0.66 0.888445
Target:  5'- -gGGGCGucAGGGGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- ugCCUGC--UCCUCCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 153591 0.66 0.888445
Target:  5'- -gGGGCGucAGGGGGUCGGaggGGCGUcAGGg -3'
miRNA:   3'- ugCCUGC--UCCUCCGGUCa--CUGCA-UCU- -5'
5244 3' -56.7 NC_001798.1 + 135215 0.66 0.888445
Target:  5'- cGCGGGCcucGGGGAGGCCGGgcUGcCGg--- -3'
miRNA:   3'- -UGCCUG---CUCCUCCGGUC--ACuGCaucu -5'
5244 3' -56.7 NC_001798.1 + 57513 0.66 0.881596
Target:  5'- uGCGGGguUGGGGGGGCgugGGUGugGUucGGGg -3'
miRNA:   3'- -UGCCU--GCUCCUCCGg--UCACugCA--UCU- -5'
5244 3' -56.7 NC_001798.1 + 36283 0.66 0.881596
Target:  5'- gGCGG-CGGGGGGG--GGUGcCGUGGGu -3'
miRNA:   3'- -UGCCuGCUCCUCCggUCACuGCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 112451 0.66 0.881596
Target:  5'- gGCGGACuugGGGGGGGgaaUAGUGGgGUGGu -3'
miRNA:   3'- -UGCCUG---CUCCUCCg--GUCACUgCAUCu -5'
5244 3' -56.7 NC_001798.1 + 96986 0.66 0.881596
Target:  5'- gGCGGGCGGcGGGGCCAG-GGCc---- -3'
miRNA:   3'- -UGCCUGCUcCUCCGGUCaCUGcaucu -5'
5244 3' -56.7 NC_001798.1 + 150916 0.66 0.87453
Target:  5'- -gGGGCGcucuucGGGGGGCgGGcggGACGUAGu -3'
miRNA:   3'- ugCCUGC------UCCUCCGgUCa--CUGCAUCu -5'
5244 3' -56.7 NC_001798.1 + 15902 0.66 0.87453
Target:  5'- cGCGGGCGGGGuGGGaaGGgGGCGUacGGAc -3'
miRNA:   3'- -UGCCUGCUCC-UCCggUCaCUGCA--UCU- -5'
5244 3' -56.7 NC_001798.1 + 15100 0.66 0.87453
Target:  5'- uCGGAa-GGcGAGGCCGGUGGCGc--- -3'
miRNA:   3'- uGCCUgcUC-CUCCGGUCACUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 24576 0.67 0.867252
Target:  5'- gGCGcGCgGAGGcGGGCCGcGUGGcCGUGGAg -3'
miRNA:   3'- -UGCcUG-CUCC-UCCGGU-CACU-GCAUCU- -5'
5244 3' -56.7 NC_001798.1 + 55997 0.67 0.867252
Target:  5'- -gGGGCGAGG-GGCUGGUaGGCGg--- -3'
miRNA:   3'- ugCCUGCUCCuCCGGUCA-CUGCaucu -5'
5244 3' -56.7 NC_001798.1 + 26903 0.67 0.867252
Target:  5'- uCGGGCGGgcGGGGGUCGGgcgGGCGgGGGn -3'
miRNA:   3'- uGCCUGCU--CCUCCGGUCa--CUGCaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.