miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5244 5' -61.3 NC_001798.1 + 81829 0.66 0.674766
Target:  5'- gUCgCCCCGUCGCCGcUUCCGcGcGUCCu -3'
miRNA:   3'- aAG-GGGGUAGUGGCuGAGGU-C-CGGGu -5'
5244 5' -61.3 NC_001798.1 + 66262 0.66 0.664829
Target:  5'- -gCCUuuCCGUCAgcCCGAagUCCAGGUCCAc -3'
miRNA:   3'- aaGGG--GGUAGU--GGCUg-AGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 103473 0.66 0.664829
Target:  5'- --gCCgCAcgCACCGugUCUGGGUCCAg -3'
miRNA:   3'- aagGGgGUa-GUGGCugAGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 126253 0.66 0.664829
Target:  5'- cUCCCUCAgcCGCCgGGCgUCCGGacGCCCAa -3'
miRNA:   3'- aAGGGGGUa-GUGG-CUG-AGGUC--CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 127 0.66 0.664829
Target:  5'- cUCCCCCGgaGCCGgccGCUCCcccgcGGGCgCCGc -3'
miRNA:   3'- aAGGGGGUagUGGC---UGAGG-----UCCG-GGU- -5'
5244 5' -61.3 NC_001798.1 + 74645 0.66 0.664829
Target:  5'- -cCCCCCGagGCCccccggggGGCcUCGGGCCCAc -3'
miRNA:   3'- aaGGGGGUagUGG--------CUGaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 84087 0.66 0.664829
Target:  5'- aUCCacaugcuggCCAUCAUCGGCcgggcgUCCAGGCCgAg -3'
miRNA:   3'- aAGGg--------GGUAGUGGCUG------AGGUCCGGgU- -5'
5244 5' -61.3 NC_001798.1 + 154465 0.66 0.664829
Target:  5'- cUCCCCCGgaGCCGgccGCUCCcccgcGGGCgCCGc -3'
miRNA:   3'- aAGGGGGUagUGGC---UGAGG-----UCCG-GGU- -5'
5244 5' -61.3 NC_001798.1 + 115804 0.66 0.661843
Target:  5'- -gCCCCUggCGCUGugUCCGGuggcguuucgugacGCCCGg -3'
miRNA:   3'- aaGGGGGuaGUGGCugAGGUC--------------CGGGU- -5'
5244 5' -61.3 NC_001798.1 + 31459 0.66 0.654867
Target:  5'- cUCCCCC---GCCGuCUCCgcgccgccccgcGGGCCCc -3'
miRNA:   3'- aAGGGGGuagUGGCuGAGG------------UCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 61444 0.66 0.654867
Target:  5'- -aCUCaCCAUCuggugaagcGCCGGggcCUCCGGGCCCc -3'
miRNA:   3'- aaGGG-GGUAG---------UGGCU---GAGGUCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 1904 0.66 0.652873
Target:  5'- --gCCCCAggaacuccacggCGCCGGCgaaggCCAGGuCCCGc -3'
miRNA:   3'- aagGGGGUa-----------GUGGCUGa----GGUCC-GGGU- -5'
5244 5' -61.3 NC_001798.1 + 88659 0.66 0.644888
Target:  5'- gUCgCCCAUgGCCa---CCAGGCCCGc -3'
miRNA:   3'- aAGgGGGUAgUGGcugaGGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 97317 0.66 0.644888
Target:  5'- -gCCCUgAUCAUCGGCggCCAGGCg-- -3'
miRNA:   3'- aaGGGGgUAGUGGCUGa-GGUCCGggu -5'
5244 5' -61.3 NC_001798.1 + 126198 0.66 0.644888
Target:  5'- -gCCCCCAaggugcaCACCGacGCUCCuucaAGGCCUg -3'
miRNA:   3'- aaGGGGGUa------GUGGC--UGAGG----UCCGGGu -5'
5244 5' -61.3 NC_001798.1 + 147288 0.66 0.644888
Target:  5'- cUUCUCCC-UCccggGCCGccccGCUcCCGGGCCCGa -3'
miRNA:   3'- -AAGGGGGuAG----UGGC----UGA-GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 28809 0.66 0.644888
Target:  5'- gUCCUCCGcCGCCGcggGC-CCGGGCCg- -3'
miRNA:   3'- aAGGGGGUaGUGGC---UGaGGUCCGGgu -5'
5244 5' -61.3 NC_001798.1 + 91499 0.66 0.644888
Target:  5'- -cCCCCCGgcucUUACCGGCggacCCGcGCCCGg -3'
miRNA:   3'- aaGGGGGU----AGUGGCUGa---GGUcCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 153212 0.66 0.644888
Target:  5'- --aCCCUAgacCGCcCGACggcCCGGGCCCGc -3'
miRNA:   3'- aagGGGGUa--GUG-GCUGa--GGUCCGGGU- -5'
5244 5' -61.3 NC_001798.1 + 77657 0.66 0.631901
Target:  5'- -gCCgCCGUCGCCGAC-CUGacggcgaagauggcGGCCCAg -3'
miRNA:   3'- aaGGgGGUAGUGGCUGaGGU--------------CCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.