miRNA display CGI


Results 1 - 20 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 34624 0.66 0.704478
Target:  5'- cGGCgGCg--GCGgGGGGGgGGgGGGg -3'
miRNA:   3'- -UCGgUGacaUGUgUCCCCgCCgCCCg -5'
5245 3' -61.2 NC_001798.1 + 84271 0.66 0.704478
Target:  5'- cGCCGgUGUucuGCACgcgcagguAGGGGuuGCaGGGCa -3'
miRNA:   3'- uCGGUgACA---UGUG--------UCCCCgcCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 79941 0.66 0.704478
Target:  5'- gGGCCcaGCUGgGCugGGcguccGGaGCGGCGGcGCc -3'
miRNA:   3'- -UCGG--UGACaUGugUC-----CC-CGCCGCC-CG- -5'
5245 3' -61.2 NC_001798.1 + 53633 0.66 0.704478
Target:  5'- cGCCGCggccaaGUACGCcgccGcGGUGGCGGGg -3'
miRNA:   3'- uCGGUGa-----CAUGUGu---CcCCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 102465 0.66 0.704478
Target:  5'- cGGgUACggGUGgGCGGGaGGaGGCGGGUa -3'
miRNA:   3'- -UCgGUGa-CAUgUGUCC-CCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 27405 0.66 0.704478
Target:  5'- uGCgACUGgcgucuuCGGGGG-GGCGGGg -3'
miRNA:   3'- uCGgUGACaugu---GUCCCCgCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 117482 0.66 0.704478
Target:  5'- cGGCCGCcGUguaccugcgcaACGCGGucGUGGCGGGa -3'
miRNA:   3'- -UCGGUGaCA-----------UGUGUCccCGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 7182 0.66 0.694741
Target:  5'- gGGCC-Ccc-GCACcGGGGCGGCGaccaugauccGGCg -3'
miRNA:   3'- -UCGGuGacaUGUGuCCCCGCCGC----------CCG- -5'
5245 3' -61.2 NC_001798.1 + 87164 0.66 0.694741
Target:  5'- gGGCUGCUGccccgcgugcaGCGCGGgcgacGGGCGGCuGGCc -3'
miRNA:   3'- -UCGGUGACa----------UGUGUC-----CCCGCCGcCCG- -5'
5245 3' -61.2 NC_001798.1 + 139938 0.66 0.694741
Target:  5'- gGGCC-CUGgcggcGCACGGGGGCGaagaCGcGCg -3'
miRNA:   3'- -UCGGuGACa----UGUGUCCCCGCc---GCcCG- -5'
5245 3' -61.2 NC_001798.1 + 27270 0.66 0.694741
Target:  5'- cAGCCcCgugGcGCGCGGGGG-GGagGGGCu -3'
miRNA:   3'- -UCGGuGa--CaUGUGUCCCCgCCg-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 113738 0.66 0.694741
Target:  5'- cGUCGCguucuaACGGGGGUguGGCGGGg -3'
miRNA:   3'- uCGGUGacaug-UGUCCCCG--CCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 146281 0.66 0.694741
Target:  5'- cAGCCGgaGagGCcgaGCGGggaguGGGCGGCcGGGCg -3'
miRNA:   3'- -UCGGUgaCa-UG---UGUC-----CCCGCCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 51307 0.66 0.693764
Target:  5'- gGGCCcgaUGgacccACGCGacguuuuGGGGCGGgUGGGCg -3'
miRNA:   3'- -UCGGug-ACa----UGUGU-------CCCCGCC-GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 29399 0.66 0.688874
Target:  5'- gGGCCGCgccgGcgggGCGcCGGGGGgacucccaucugcguCGGCGGGg -3'
miRNA:   3'- -UCGGUGa---Ca---UGU-GUCCCC---------------GCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 82174 0.66 0.688874
Target:  5'- cGGCCGCgGUuuccgcCGCAGcGGCGGCagugccgccuucuccGGGCc -3'
miRNA:   3'- -UCGGUGaCAu-----GUGUCcCCGCCG---------------CCCG- -5'
5245 3' -61.2 NC_001798.1 + 147220 0.66 0.684954
Target:  5'- gGGCCcccgGCgGaGCGCGGGGGCcccggGGCcccGGGCc -3'
miRNA:   3'- -UCGG----UGaCaUGUGUCCCCG-----CCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 26357 0.66 0.684954
Target:  5'- cGGCCcgGCggagcUGCGCGGGccGCGGCGGGa -3'
miRNA:   3'- -UCGG--UGac---AUGUGUCCc-CGCCGCCCg -5'
5245 3' -61.2 NC_001798.1 + 122058 0.66 0.684954
Target:  5'- gAGCC-CUGgGCGCgucggacgcggAGGcGGUgcuGGCGGGCc -3'
miRNA:   3'- -UCGGuGACaUGUG-----------UCC-CCG---CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 45244 0.66 0.684954
Target:  5'- uGGCCACcauccugcagaUGUACAUgucgguGGGGGCcGCGGa- -3'
miRNA:   3'- -UCGGUG-----------ACAUGUG------UCCCCGcCGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.