miRNA display CGI


Results 21 - 40 of 197 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5245 3' -61.2 NC_001798.1 + 148370 0.72 0.339479
Target:  5'- cAGCCAggGUGaGgAGGGGCgggcguGGCGGGCa -3'
miRNA:   3'- -UCGGUgaCAUgUgUCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 148263 0.73 0.317853
Target:  5'- cAGCCAggGUAaGgAGGGGCgggcguGGCGGGCa -3'
miRNA:   3'- -UCGGUgaCAUgUgUCCCCG------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 147609 0.71 0.377842
Target:  5'- aGGCgGCgGggagAgGgGGGGGgGGCGGGCg -3'
miRNA:   3'- -UCGgUGaCa---UgUgUCCCCgCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 147220 0.66 0.684954
Target:  5'- gGGCCcccgGCgGaGCGCGGGGGCcccggGGCcccGGGCc -3'
miRNA:   3'- -UCGG----UGaCaUGUGUCCCCG-----CCG---CCCG- -5'
5245 3' -61.2 NC_001798.1 + 147170 0.66 0.675126
Target:  5'- uAGCCGCccgGCGCc-GGGCGGaaGGCg -3'
miRNA:   3'- -UCGGUGacaUGUGucCCCGCCgcCCG- -5'
5245 3' -61.2 NC_001798.1 + 146558 0.68 0.547049
Target:  5'- uGGCCGCgGgccaGCAGacGGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGaCaug-UGUC--CCCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 146281 0.66 0.694741
Target:  5'- cAGCCGgaGagGCcgaGCGGggaguGGGCGGCcGGGCg -3'
miRNA:   3'- -UCGGUgaCa-UG---UGUC-----CCCGCCG-CCCG- -5'
5245 3' -61.2 NC_001798.1 + 146027 0.69 0.490186
Target:  5'- cAGCCAag--GCGCGGuGGGgGGCGuGGUg -3'
miRNA:   3'- -UCGGUgacaUGUGUC-CCCgCCGC-CCG- -5'
5245 3' -61.2 NC_001798.1 + 145773 0.71 0.393982
Target:  5'- cGCCGCccaccccgggGUccACACAGGaGCGcGCGGGCg -3'
miRNA:   3'- uCGGUGa---------CA--UGUGUCCcCGC-CGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 144311 0.67 0.595957
Target:  5'- gGGgCACggaaGUcgGCAGGGGCGGCGucGCa -3'
miRNA:   3'- -UCgGUGa---CAugUGUCCCCGCCGCc-CG- -5'
5245 3' -61.2 NC_001798.1 + 139938 0.66 0.694741
Target:  5'- gGGCC-CUGgcggcGCACGGGGGCGaagaCGcGCg -3'
miRNA:   3'- -UCGGuGACa----UGUGUCCCCGCc---GCcCG- -5'
5245 3' -61.2 NC_001798.1 + 139049 0.7 0.453844
Target:  5'- cAGCCGCUGcgGCu--GGaGGCcGCGGGCc -3'
miRNA:   3'- -UCGGUGACa-UGuguCC-CCGcCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 136587 0.67 0.595957
Target:  5'- aGGCCACacaGUcCguGCGGGGGaCGGgccCGGGCa -3'
miRNA:   3'- -UCGGUGa--CAuG--UGUCCCC-GCC---GCCCG- -5'
5245 3' -61.2 NC_001798.1 + 135229 0.75 0.236193
Target:  5'- aGGCCggGCUGccggaaGCcCGGGGGCgGGCGGGCc -3'
miRNA:   3'- -UCGG--UGACa-----UGuGUCCCCG-CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 134975 0.72 0.354479
Target:  5'- uGCCGC-GUGCcUGGGGGCcuggcccgcGGUGGGCg -3'
miRNA:   3'- uCGGUGaCAUGuGUCCCCG---------CCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 134267 0.66 0.645477
Target:  5'- cGGCC-CUGgaGCGcCAGacGGGcCGGUGGGCc -3'
miRNA:   3'- -UCGGuGACa-UGU-GUC--CCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 134208 0.67 0.615737
Target:  5'- -cCCGCUGgagcccCugGGGGacccgacccuGUGGCGGGCg -3'
miRNA:   3'- ucGGUGACau----GugUCCC----------CGCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 132135 0.78 0.141853
Target:  5'- cGGCC-CUGcGCcgcCGGGGGcCGGCGGGCg -3'
miRNA:   3'- -UCGGuGACaUGu--GUCCCC-GCCGCCCG- -5'
5245 3' -61.2 NC_001798.1 + 125711 0.66 0.65538
Target:  5'- cGGgCGC---GCGCGGGGGCGGCGa-- -3'
miRNA:   3'- -UCgGUGacaUGUGUCCCCGCCGCccg -5'
5245 3' -61.2 NC_001798.1 + 125636 0.69 0.499484
Target:  5'- cAGCUGCUGgccaaacauCGCGGGcgaGGCGG-GGGCg -3'
miRNA:   3'- -UCGGUGACau-------GUGUCC---CCGCCgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.