miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5246 3' -56.1 NC_001798.1 + 112414 0.66 0.919772
Target:  5'- gGUGGCauaGCUgagcuccauggccggCGAGCCAcggggcGGACUugGGg -3'
miRNA:   3'- -CACCGa--UGG---------------GCUCGGUu-----CCUGAugCC- -5'
5246 3' -56.1 NC_001798.1 + 153051 0.66 0.91751
Target:  5'- -cGGUUGgCCGGcGCCGcccccuGGGGCggGCGGa -3'
miRNA:   3'- caCCGAUgGGCU-CGGU------UCCUGa-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 148069 0.66 0.911692
Target:  5'- gGUGGCggaaggAaaCGGGCCGGGGGC--CGGg -3'
miRNA:   3'- -CACCGa-----UggGCUCGGUUCCUGauGCC- -5'
5246 3' -56.1 NC_001798.1 + 107442 0.66 0.911692
Target:  5'- -cGGCgacCCCGcGCCccgaccccGAGGACggcGCGGg -3'
miRNA:   3'- caCCGau-GGGCuCGG--------UUCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 144333 0.66 0.905639
Target:  5'- -cGGCgucgcaucGCCCGAcagccCCAGGGGCUGuuCGGg -3'
miRNA:   3'- caCCGa-------UGGGCUc----GGUUCCUGAU--GCC- -5'
5246 3' -56.1 NC_001798.1 + 15273 0.66 0.905639
Target:  5'- -cGGUgcCCCGGGUUccGGGCgugGCGGu -3'
miRNA:   3'- caCCGauGGGCUCGGuuCCUGa--UGCC- -5'
5246 3' -56.1 NC_001798.1 + 75462 0.66 0.905639
Target:  5'- gGUGGCcgGCCCG-GCCGcGGccCUGCuGGa -3'
miRNA:   3'- -CACCGa-UGGGCuCGGUuCCu-GAUG-CC- -5'
5246 3' -56.1 NC_001798.1 + 76037 0.66 0.901895
Target:  5'- -gGGC--CCCGAgGCCAuccaggcgcggcuggAGGACgUGCGGa -3'
miRNA:   3'- caCCGauGGGCU-CGGU---------------UCCUG-AUGCC- -5'
5246 3' -56.1 NC_001798.1 + 2113 0.66 0.899353
Target:  5'- -cGGCgcgGCCCGcGGCCAGGuccucgcccGGCaGCGGc -3'
miRNA:   3'- caCCGa--UGGGC-UCGGUUC---------CUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 142151 0.66 0.899353
Target:  5'- gGUGGUgcacgUGuuUGAGUCAGGGACgcgcGCGGu -3'
miRNA:   3'- -CACCG-----AUggGCUCGGUUCCUGa---UGCC- -5'
5246 3' -56.1 NC_001798.1 + 9157 0.66 0.899353
Target:  5'- -cGGCgccGCCCGcGCCGGGGGgcagggucuCUgGCGGg -3'
miRNA:   3'- caCCGa--UGGGCuCGGUUCCU---------GA-UGCC- -5'
5246 3' -56.1 NC_001798.1 + 154280 0.66 0.899353
Target:  5'- cGUGcGCaGCCCGGGCCGug--UUGCGGg -3'
miRNA:   3'- -CAC-CGaUGGGCUCGGUuccuGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 88950 0.66 0.892838
Target:  5'- aUGGCgGCCUGuugcuuGUCGAGGAggACGGc -3'
miRNA:   3'- cACCGaUGGGCu-----CGGUUCCUgaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 52347 0.66 0.892838
Target:  5'- cGUGGCgg-CCGAGCaCGAGGcGCUgggcgacaccGCGGc -3'
miRNA:   3'- -CACCGaugGGCUCG-GUUCC-UGA----------UGCC- -5'
5246 3' -56.1 NC_001798.1 + 61467 0.66 0.892838
Target:  5'- -gGGCc-UCCGGGCCccgGAGGGCUACu- -3'
miRNA:   3'- caCCGauGGGCUCGG---UUCCUGAUGcc -5'
5246 3' -56.1 NC_001798.1 + 108302 0.66 0.892838
Target:  5'- uUGGCgccCCCGGGCgAAcucaaccuGACUACGGc -3'
miRNA:   3'- cACCGau-GGGCUCGgUUc-------CUGAUGCC- -5'
5246 3' -56.1 NC_001798.1 + 1808 0.67 0.886097
Target:  5'- -cGuGCUGCCgCGAGaCCAcGGGCccgucgGCGGg -3'
miRNA:   3'- caC-CGAUGG-GCUC-GGUuCCUGa-----UGCC- -5'
5246 3' -56.1 NC_001798.1 + 122137 0.67 0.886097
Target:  5'- -gGGCc-CCCGGGCCGcGGGCga-GGa -3'
miRNA:   3'- caCCGauGGGCUCGGUuCCUGaugCC- -5'
5246 3' -56.1 NC_001798.1 + 69272 0.67 0.886097
Target:  5'- -gGGUUACCuggCGGGUCAGGuGAUaGCGGg -3'
miRNA:   3'- caCCGAUGG---GCUCGGUUC-CUGaUGCC- -5'
5246 3' -56.1 NC_001798.1 + 150499 0.67 0.884721
Target:  5'- uGUGGCagaccucccccCCCGGGgcCCGAGGACaccugUGCGGa -3'
miRNA:   3'- -CACCGau---------GGGCUC--GGUUCCUG-----AUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.