miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5250 3' -60.4 NC_001798.1 + 152351 0.66 0.766977
Target:  5'- aGUCUCUGUcucUCCgggUCuCCUCCUCCCgCCg -3'
miRNA:   3'- -CGGGGGUAa--AGGa--AG-GGGGGAGGG-GG- -5'
5250 3' -60.4 NC_001798.1 + 132143 0.66 0.764244
Target:  5'- cGCCgCCGggggCCggcgggcggggcgccCCCCCCggacgCCCCCc -3'
miRNA:   3'- -CGGgGGUaaa-GGaa-------------GGGGGGa----GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 27725 0.66 0.75783
Target:  5'- aGUCCCCG--UCCUgccgCCgCCCCUUaagagggCCCg -3'
miRNA:   3'- -CGGGGGUaaAGGAa---GG-GGGGAGg------GGG- -5'
5250 3' -60.4 NC_001798.1 + 147066 0.66 0.75783
Target:  5'- gGCCCCCGca-CCUcggcggCCgCCC-CCUCCg -3'
miRNA:   3'- -CGGGGGUaaaGGAa-----GGgGGGaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 7490 0.66 0.75783
Target:  5'- uGCCuagCCCGguccCCUacgCCCCCCUCggcagcccggaCCCCu -3'
miRNA:   3'- -CGG---GGGUaaa-GGAa--GGGGGGAG-----------GGGG- -5'
5250 3' -60.4 NC_001798.1 + 28231 0.66 0.75783
Target:  5'- cGCCUgCCGccgCCUgCCCCCCgCCgCCg -3'
miRNA:   3'- -CGGG-GGUaaaGGAaGGGGGGaGGgGG- -5'
5250 3' -60.4 NC_001798.1 + 30118 0.66 0.75783
Target:  5'- -aCCCC--UUUCUcCCCCCCUUCCg- -3'
miRNA:   3'- cgGGGGuaAAGGAaGGGGGGAGGGgg -5'
5250 3' -60.4 NC_001798.1 + 128008 0.66 0.75783
Target:  5'- aCCCCCGaca--UUCCCCUCUCgCCg -3'
miRNA:   3'- cGGGGGUaaaggAAGGGGGGAGgGGg -5'
5250 3' -60.4 NC_001798.1 + 91341 0.66 0.754142
Target:  5'- aGCCgCCGg---CUUCCCCCCgggggaagccgggCCgCCCg -3'
miRNA:   3'- -CGGgGGUaaagGAAGGGGGGa------------GG-GGG- -5'
5250 3' -60.4 NC_001798.1 + 126392 0.66 0.74858
Target:  5'- aGCCgCUCGUcucgucgCCgcucgUCCCCCgaggCCCCCg -3'
miRNA:   3'- -CGG-GGGUAaa-----GGaa---GGGGGGa---GGGGG- -5'
5250 3' -60.4 NC_001798.1 + 50423 0.66 0.74858
Target:  5'- cGCCCCCcccccaCCaccgCCCCgCCUCaCCuCCg -3'
miRNA:   3'- -CGGGGGuaaa--GGaa--GGGG-GGAG-GG-GG- -5'
5250 3' -60.4 NC_001798.1 + 40317 0.66 0.739235
Target:  5'- cUCCCCGUcgggcgUCaccgCCCCCg-CCCCCg -3'
miRNA:   3'- cGGGGGUAa-----AGgaa-GGGGGgaGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 148338 0.66 0.739235
Target:  5'- gGUCUCCucUUCCUgcUCCUCCUccuuUCUCCCa -3'
miRNA:   3'- -CGGGGGuaAAGGA--AGGGGGG----AGGGGG- -5'
5250 3' -60.4 NC_001798.1 + 61763 0.66 0.739235
Target:  5'- cGCCgCCg---CCUUCCCCCaucaccgaCUCCaggCCCa -3'
miRNA:   3'- -CGGgGGuaaaGGAAGGGGG--------GAGG---GGG- -5'
5250 3' -60.4 NC_001798.1 + 121820 0.66 0.739235
Target:  5'- gGCaCCCCAga-CC--CCCCCauCUCCCCg -3'
miRNA:   3'- -CG-GGGGUaaaGGaaGGGGG--GAGGGGg -5'
5250 3' -60.4 NC_001798.1 + 146966 0.66 0.739235
Target:  5'- cGCCuCCCGUcUUCUUCCgCgCCUCCgagggUCCg -3'
miRNA:   3'- -CGG-GGGUAaAGGAAGGgG-GGAGG-----GGG- -5'
5250 3' -60.4 NC_001798.1 + 21793 0.66 0.729804
Target:  5'- cGCCCCCcg-UCCgggCCCgCCUCggggcggagCCCg -3'
miRNA:   3'- -CGGGGGuaaAGGaa-GGGgGGAG---------GGGg -5'
5250 3' -60.4 NC_001798.1 + 21480 0.66 0.729804
Target:  5'- cCCCCCGg--CCggCCCCCCgggUCaCCg -3'
miRNA:   3'- cGGGGGUaaaGGaaGGGGGGa--GGgGG- -5'
5250 3' -60.4 NC_001798.1 + 47447 0.66 0.729804
Target:  5'- gGUCUCCc--UCUUUCCCuCCCUCgCCgCCu -3'
miRNA:   3'- -CGGGGGuaaAGGAAGGG-GGGAG-GG-GG- -5'
5250 3' -60.4 NC_001798.1 + 31437 0.66 0.729804
Target:  5'- cCCCCCAUagUCaUCagcgaCUCUCCCCCg -3'
miRNA:   3'- cGGGGGUAaaGGaAGgg---GGGAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.