miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5252 5' -65.1 NC_001798.1 + 134917 0.66 0.522498
Target:  5'- -cGGCCGCcGCCGccGCCgAGuCGGCgCGu -3'
miRNA:   3'- acUCGGCGaCGGC--UGGgUC-GCCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 4687 0.66 0.522498
Target:  5'- aGGGCCaGCUGCCGcggcgagacgacGCCguccgCGGCaGGCUCGu -3'
miRNA:   3'- aCUCGG-CGACGGC------------UGG-----GUCG-CCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 15985 0.66 0.522498
Target:  5'- gUGGGUCGUgccauCCGAauaaaCguGCGGCCCGu -3'
miRNA:   3'- -ACUCGGCGac---GGCUg----GguCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 27610 0.66 0.522498
Target:  5'- gGGGCgCGCgggGCUG-CCCuGCcGCCCGc -3'
miRNA:   3'- aCUCG-GCGa--CGGCuGGGuCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 44212 0.66 0.522498
Target:  5'- gUGAgGCCGC-GCUGcCCCAGgGacaugcGCCCGa -3'
miRNA:   3'- -ACU-CGGCGaCGGCuGGGUCgC------CGGGC- -5'
5252 5' -65.1 NC_001798.1 + 146451 0.66 0.522498
Target:  5'- gGAGcCCGCgGCCGcaGCCgAGCaGCgCCGc -3'
miRNA:   3'- aCUC-GGCGaCGGC--UGGgUCGcCG-GGC- -5'
5252 5' -65.1 NC_001798.1 + 49077 0.66 0.522498
Target:  5'- --cGCCGCccaUGcCCGuCCCccccGCGGCCCu -3'
miRNA:   3'- acuCGGCG---AC-GGCuGGGu---CGCCGGGc -5'
5252 5' -65.1 NC_001798.1 + 30867 0.66 0.521571
Target:  5'- cGcGCC-CUGUCG-CCCAcccccccGUGGCCCGg -3'
miRNA:   3'- aCuCGGcGACGGCuGGGU-------CGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 53890 0.66 0.516947
Target:  5'- aGGGcCCGCggagacguuugcgcGCCaccuggaccgcgGGCCCAGCGGCaCCa -3'
miRNA:   3'- aCUC-GGCGa-------------CGG------------CUGGGUCGCCG-GGc -5'
5252 5' -65.1 NC_001798.1 + 34729 0.66 0.513259
Target:  5'- aGGGgCGaggGUCgGGCCCgggagcggGGCGGCCCGg -3'
miRNA:   3'- aCUCgGCga-CGG-CUGGG--------UCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 1990 0.66 0.513259
Target:  5'- gGGGCgcgguccaGUUGCCcGCCCAgGCGGCCg- -3'
miRNA:   3'- aCUCGg-------CGACGGcUGGGU-CGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 70310 0.66 0.513259
Target:  5'- cGGGCgCgGCgGUCGGCCCGGCggaGGCgCGg -3'
miRNA:   3'- aCUCG-G-CGaCGGCUGGGUCG---CCGgGC- -5'
5252 5' -65.1 NC_001798.1 + 86855 0.66 0.513259
Target:  5'- -nGGCCGCgacaaGACCCGGCGGCg-- -3'
miRNA:   3'- acUCGGCGacgg-CUGGGUCGCCGggc -5'
5252 5' -65.1 NC_001798.1 + 98280 0.66 0.513259
Target:  5'- uUGAGuuGC-GCCGcCCCgacugcAGCcGCCCGa -3'
miRNA:   3'- -ACUCggCGaCGGCuGGG------UCGcCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 150019 0.66 0.513259
Target:  5'- -uGGCCGCgGUCG-CCCGaguccgaguccGgGGCCCGg -3'
miRNA:   3'- acUCGGCGaCGGCuGGGU-----------CgCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 152202 0.66 0.512339
Target:  5'- gGGGUCGCccucucaccgUGCCGggggucuGCCgCGGCGGCCg- -3'
miRNA:   3'- aCUCGGCG----------ACGGC-------UGG-GUCGCCGGgc -5'
5252 5' -65.1 NC_001798.1 + 39105 0.66 0.504088
Target:  5'- -uGGCCuugGCUGUCGAC---GCGGCCCGc -3'
miRNA:   3'- acUCGG---CGACGGCUGgguCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 91868 0.66 0.504088
Target:  5'- -cGGCCGCcccgGCCGAgcauaCCCAGCucugGGCCg- -3'
miRNA:   3'- acUCGGCGa---CGGCU-----GGGUCG----CCGGgc -5'
5252 5' -65.1 NC_001798.1 + 85152 0.66 0.504088
Target:  5'- cGAgGCCcuguGC-GCCGAgcuCCUGGCGGCCUGu -3'
miRNA:   3'- aCU-CGG----CGaCGGCU---GGGUCGCCGGGC- -5'
5252 5' -65.1 NC_001798.1 + 51474 0.66 0.504088
Target:  5'- cGGGCCGCgUGUCgGGCCCggagcugcaGGCGGCa-- -3'
miRNA:   3'- aCUCGGCG-ACGG-CUGGG---------UCGCCGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.