miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 3' -60.2 NC_001798.1 + 78840 0.66 0.753092
Target:  5'- cGGCcccuGGCGCgGcacGCCG-GCCGCcugggGGCg -3'
miRNA:   3'- -CCG----UCGUGgCua-CGGCaCGGCGa----CCG- -5'
5253 3' -60.2 NC_001798.1 + 1782 0.66 0.753092
Target:  5'- gGGCAGCACCucgcaggccaGGUaGgCGUGCUGCc-GCg -3'
miRNA:   3'- -CCGUCGUGG----------CUA-CgGCACGGCGacCG- -5'
5253 3' -60.2 NC_001798.1 + 4370 0.66 0.753092
Target:  5'- gGGC-GCGCCGGcgGCgGUGgUGgUGGUg -3'
miRNA:   3'- -CCGuCGUGGCUa-CGgCACgGCgACCG- -5'
5253 3' -60.2 NC_001798.1 + 32365 0.66 0.753092
Target:  5'- gGGCGGCcCCGA-GCCcgggGCCcGCgacccGGCg -3'
miRNA:   3'- -CCGUCGuGGCUaCGGca--CGG-CGa----CCG- -5'
5253 3' -60.2 NC_001798.1 + 46222 0.66 0.753092
Target:  5'- gGGaCGGCugU-AUGaCCGUggcGCCGUUGGCc -3'
miRNA:   3'- -CC-GUCGugGcUAC-GGCA---CGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 138272 0.66 0.753092
Target:  5'- aGGCGcGUACCG-UGUCGUugauGUCGCccacgUGGCg -3'
miRNA:   3'- -CCGU-CGUGGCuACGGCA----CGGCG-----ACCG- -5'
5253 3' -60.2 NC_001798.1 + 239 0.66 0.753092
Target:  5'- cGGCAGgACgGGgacuagcagGCUGUGCCGCa--- -3'
miRNA:   3'- -CCGUCgUGgCUa--------CGGCACGGCGaccg -5'
5253 3' -60.2 NC_001798.1 + 15554 0.66 0.753092
Target:  5'- -cCGGCcCCGGgcguUGCCGccGCCGC-GGCg -3'
miRNA:   3'- ccGUCGuGGCU----ACGGCa-CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 75713 0.66 0.753092
Target:  5'- uGCAGCugCGc-GCCGccCCGCcGGCc -3'
miRNA:   3'- cCGUCGugGCuaCGGCacGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 76187 0.66 0.753092
Target:  5'- cGUGGCcucgGCCGcgGUCGUGCCcaugguccaguuGCUGGa -3'
miRNA:   3'- cCGUCG----UGGCuaCGGCACGG------------CGACCg -5'
5253 3' -60.2 NC_001798.1 + 79115 0.66 0.753092
Target:  5'- gGGCgccaagGGCGCCGAgcgcgcggagGCCGUGgaggaGCUGGg -3'
miRNA:   3'- -CCG------UCGUGGCUa---------CGGCACgg---CGACCg -5'
5253 3' -60.2 NC_001798.1 + 83594 0.66 0.749347
Target:  5'- gGGCGGcCAUCGGgaccuugggucgcGCCGUaagaaucggGCCGgaGGCg -3'
miRNA:   3'- -CCGUC-GUGGCUa------------CGGCA---------CGGCgaCCG- -5'
5253 3' -60.2 NC_001798.1 + 25584 0.66 0.743702
Target:  5'- gGGCgAGgACCug-GCCGcggGCCGCgccgggGGCg -3'
miRNA:   3'- -CCG-UCgUGGcuaCGGCa--CGGCGa-----CCG- -5'
5253 3' -60.2 NC_001798.1 + 113781 0.66 0.743702
Target:  5'- gGGCAGCucGCCc---CCGUGCCuGUUGGg -3'
miRNA:   3'- -CCGUCG--UGGcuacGGCACGG-CGACCg -5'
5253 3' -60.2 NC_001798.1 + 2032 0.66 0.743702
Target:  5'- cGCAGaGCCGGuUGCCcaggGCCGCcagcaGGCa -3'
miRNA:   3'- cCGUCgUGGCU-ACGGca--CGGCGa----CCG- -5'
5253 3' -60.2 NC_001798.1 + 80251 0.66 0.743702
Target:  5'- gGGCcuccuguucGGCA-CGcgGCUG-GCCGaCUGGCg -3'
miRNA:   3'- -CCG---------UCGUgGCuaCGGCaCGGC-GACCG- -5'
5253 3' -60.2 NC_001798.1 + 98602 0.66 0.743702
Target:  5'- cGGCGGCcCCGGcgGCCcc-CCGCgccucgGGCg -3'
miRNA:   3'- -CCGUCGuGGCUa-CGGcacGGCGa-----CCG- -5'
5253 3' -60.2 NC_001798.1 + 127303 0.66 0.743702
Target:  5'- gGGCAGa--CGcUGCUGgaGCUGCUGGUu -3'
miRNA:   3'- -CCGUCgugGCuACGGCa-CGGCGACCG- -5'
5253 3' -60.2 NC_001798.1 + 57134 0.66 0.743702
Target:  5'- aGCGGC-CCGAcGaCCGaguacaGCCGCgGGCu -3'
miRNA:   3'- cCGUCGuGGCUaC-GGCa-----CGGCGaCCG- -5'
5253 3' -60.2 NC_001798.1 + 43084 0.66 0.738023
Target:  5'- gGGCucgGGCGCCGccGCCGcguccgcgaccacgGUCGCUuccGGCg -3'
miRNA:   3'- -CCG---UCGUGGCuaCGGCa-------------CGGCGA---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.