miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5253 5' -54.6 NC_001798.1 + 154075 0.66 0.960044
Target:  5'- cGGGGcGCGGCACGGcuggagcgccGGggCGCGGccgGCg -3'
miRNA:   3'- cUCUCuUGCUGUGCC----------UCa-GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 42156 0.66 0.960044
Target:  5'- uGGAGGACGcggaucuccCGCGGGGcCGCGGa-- -3'
miRNA:   3'- cUCUCUUGCu--------GUGCCUCaGCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 105691 0.66 0.960044
Target:  5'- aGGGAGAgGCGACagACGGGGgcgacaGCGGUc- -3'
miRNA:   3'- -CUCUCU-UGCUG--UGCCUCag----CGCCAcg -5'
5253 5' -54.6 NC_001798.1 + 58774 0.66 0.960044
Target:  5'- cAGGGugcCGACAaacaGGGGcCGCGGgGCg -3'
miRNA:   3'- cUCUCuu-GCUGUg---CCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 66793 0.66 0.960044
Target:  5'- cGGAGucggccGACGcGCGCGGGuccGUCGCGGaGCc -3'
miRNA:   3'- cUCUC------UUGC-UGUGCCU---CAGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 83649 0.66 0.960044
Target:  5'- gGAGGGGAUG-UGCGGc-UCGCGG-GCg -3'
miRNA:   3'- -CUCUCUUGCuGUGCCucAGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 150113 0.66 0.960044
Target:  5'- cGGAGGAaGAgGCGGAGgacgaggcCGCGGgGCc -3'
miRNA:   3'- cUCUCUUgCUgUGCCUCa-------GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 150620 0.66 0.959686
Target:  5'- uGGGGGGcuccuggGCcGCGCGGGGcugucUCGCGGgggGCg -3'
miRNA:   3'- -CUCUCU-------UGcUGUGCCUC-----AGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 15049 0.66 0.956357
Target:  5'- gGGGcGGAugGGCcCGGGGcgCGCGGgggGUg -3'
miRNA:   3'- -CUC-UCUugCUGuGCCUCa-GCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 146115 0.66 0.956357
Target:  5'- gGGGGGGugGugGCGGcg--GCGGUGg -3'
miRNA:   3'- -CUCUCUugCugUGCCucagCGCCACg -5'
5253 5' -54.6 NC_001798.1 + 78319 0.66 0.956357
Target:  5'- --cGGAAUGACcCGGAGgccacCGCGGaGCu -3'
miRNA:   3'- cucUCUUGCUGuGCCUCa----GCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 92330 0.66 0.956357
Target:  5'- ----cGGCGACGCGGAcGUCGCcGUcGCg -3'
miRNA:   3'- cucucUUGCUGUGCCU-CAGCGcCA-CG- -5'
5253 5' -54.6 NC_001798.1 + 121866 0.66 0.956357
Target:  5'- cGGGAG-GCGACACGGccacCGCGGa-- -3'
miRNA:   3'- -CUCUCuUGCUGUGCCuca-GCGCCacg -5'
5253 5' -54.6 NC_001798.1 + 39795 0.66 0.956357
Target:  5'- -cGAGGcGCGACcacacgcCGGuGGUCGCGGgugGCg -3'
miRNA:   3'- cuCUCU-UGCUGu------GCC-UCAGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 34967 0.66 0.952445
Target:  5'- gGAGGGGGCGGcCGCcGAGgUGCGGggGCc -3'
miRNA:   3'- -CUCUCUUGCU-GUGcCUCaGCGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 149915 0.66 0.952445
Target:  5'- aGGAGGAgGAgGCGGAGgaggaggagGCGGcgGCg -3'
miRNA:   3'- cUCUCUUgCUgUGCCUCag-------CGCCa-CG- -5'
5253 5' -54.6 NC_001798.1 + 150844 0.66 0.952445
Target:  5'- cAGGGGGCGcCGguCGG-GUCGCGGcggGCu -3'
miRNA:   3'- cUCUCUUGCuGU--GCCuCAGCGCCa--CG- -5'
5253 5' -54.6 NC_001798.1 + 151212 0.66 0.952445
Target:  5'- ----cAGCGACAgGGAG-CGCGGgGCc -3'
miRNA:   3'- cucucUUGCUGUgCCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 22727 0.66 0.952445
Target:  5'- -cGAcGACGACGCaGGGcCGCGGgGCc -3'
miRNA:   3'- cuCUcUUGCUGUGcCUCaGCGCCaCG- -5'
5253 5' -54.6 NC_001798.1 + 16040 0.66 0.952445
Target:  5'- gGGGAGcaaaAGCGACGCGuGguaGGUCGCuGGggGCg -3'
miRNA:   3'- -CUCUC----UUGCUGUGC-C---UCAGCG-CCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.