miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 3' -54.4 NC_001798.1 + 125745 0.65 0.95837
Target:  5'- --cGCCGCcacgcggcccugcGCCGACGuuuggccgAGaCGCACCu -3'
miRNA:   3'- caaUGGCGu------------CGGCUGCua------UC-GCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 23642 0.66 0.956101
Target:  5'- --gACCGCgGGCCGcCuggAGCGcCGCCg -3'
miRNA:   3'- caaUGGCG-UCGGCuGcuaUCGC-GUGG- -5'
5255 3' -54.4 NC_001798.1 + 24316 0.66 0.956101
Target:  5'- --gACCGgGGCgcgaacccccgaCGACGGcGGCGaCGCCa -3'
miRNA:   3'- caaUGGCgUCG------------GCUGCUaUCGC-GUGG- -5'
5255 3' -54.4 NC_001798.1 + 61984 0.66 0.956101
Target:  5'- --aGCUGgaGGCCGACGAcgccuGCGCgaACCu -3'
miRNA:   3'- caaUGGCg-UCGGCUGCUau---CGCG--UGG- -5'
5255 3' -54.4 NC_001798.1 + 72338 0.66 0.956101
Target:  5'- -gUGCUGCAGgagcUCGcCGA--GCGCGCCg -3'
miRNA:   3'- caAUGGCGUC----GGCuGCUauCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 57119 0.66 0.956101
Target:  5'- --aGCCGCuGCCGACcc-AGCG-GCCc -3'
miRNA:   3'- caaUGGCGuCGGCUGcuaUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 75992 0.66 0.956101
Target:  5'- --cGCCGCcccgggcGCCGGCGGcAGgGCcCCg -3'
miRNA:   3'- caaUGGCGu------CGGCUGCUaUCgCGuGG- -5'
5255 3' -54.4 NC_001798.1 + 91970 0.66 0.956101
Target:  5'- ---cCCGUccGGCgCGAucCGGUGGCGgGCCa -3'
miRNA:   3'- caauGGCG--UCG-GCU--GCUAUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 97464 0.66 0.956101
Target:  5'- -cUGgCGCGGCUGGgggcCGGcGGCGCgACCg -3'
miRNA:   3'- caAUgGCGUCGGCU----GCUaUCGCG-UGG- -5'
5255 3' -54.4 NC_001798.1 + 102384 0.66 0.956101
Target:  5'- --cGCCugGCGGUcggCGGCGAUGGCcccCACCa -3'
miRNA:   3'- caaUGG--CGUCG---GCUGCUAUCGc--GUGG- -5'
5255 3' -54.4 NC_001798.1 + 109688 0.66 0.956101
Target:  5'- --cGCCGUucCUGGCG--GGCGCGCCc -3'
miRNA:   3'- caaUGGCGucGGCUGCuaUCGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 103587 0.66 0.955326
Target:  5'- --aACCGCucgcgcauuuccGCCGACGccAUGG-GCACCc -3'
miRNA:   3'- caaUGGCGu-----------CGGCUGC--UAUCgCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 51933 0.66 0.954936
Target:  5'- gGggGCCGCcGCCGugccgcugcucagcGCGGgaggGGCcGCGCCc -3'
miRNA:   3'- -CaaUGGCGuCGGC--------------UGCUa---UCG-CGUGG- -5'
5255 3' -54.4 NC_001798.1 + 61308 0.66 0.95375
Target:  5'- --cGCCGCAGCCacuguacacaggggcGGCGGgcuugGGUGUcCCg -3'
miRNA:   3'- caaUGGCGUCGG---------------CUGCUa----UCGCGuGG- -5'
5255 3' -54.4 NC_001798.1 + 121697 0.66 0.952136
Target:  5'- gGggGCCGCGGCucccgccgccgCGACGGaGGCGgcggccCACCu -3'
miRNA:   3'- -CaaUGGCGUCG-----------GCUGCUaUCGC------GUGG- -5'
5255 3' -54.4 NC_001798.1 + 39573 0.66 0.952136
Target:  5'- ---uCCGC-GCCGACGcgggGUGGCG-ACCc -3'
miRNA:   3'- caauGGCGuCGGCUGC----UAUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 2204 0.66 0.952136
Target:  5'- --gGCCGCcGCgCGGCGc-AGCGgGCCc -3'
miRNA:   3'- caaUGGCGuCG-GCUGCuaUCGCgUGG- -5'
5255 3' -54.4 NC_001798.1 + 153401 0.66 0.952136
Target:  5'- ---gUCGCGGUCGGCccgcucGCGCGCCc -3'
miRNA:   3'- caauGGCGUCGGCUGcuau--CGCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 83424 0.66 0.952136
Target:  5'- --cGCCGCGGCCugcccGCGAagaaacucuCGCACCg -3'
miRNA:   3'- caaUGGCGUCGGc----UGCUauc------GCGUGG- -5'
5255 3' -54.4 NC_001798.1 + 11376 0.66 0.952136
Target:  5'- uGggAUCGCAGCuCGGCuccgaGGCGgGCCa -3'
miRNA:   3'- -CaaUGGCGUCG-GCUGcua--UCGCgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.