miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5255 5' -59.8 NC_001798.1 + 87504 0.66 0.775804
Target:  5'- -cGG-AUGCUgACCGCGuGcCCCGGCUAc -3'
miRNA:   3'- cuCCaUGUGA-UGGCGC-CaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 34816 0.66 0.766658
Target:  5'- cGGGGcccccGCGCUccGCCGgGGgCCCgGGCCGg -3'
miRNA:   3'- -CUCCa----UGUGA--UGGCgCCaGGG-CCGGU- -5'
5255 5' -59.8 NC_001798.1 + 3013 0.66 0.766658
Target:  5'- cGGGG-GCGCggcggGCCG-GGcUCCGGCCAg -3'
miRNA:   3'- -CUCCaUGUGa----UGGCgCCaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 69203 0.66 0.761116
Target:  5'- -cGGUGgGgUGCCGCaGGgccaaaaggagcgcCCCGGCCGg -3'
miRNA:   3'- cuCCAUgUgAUGGCG-CCa-------------GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 66765 0.66 0.757399
Target:  5'- uGGGGUGCggcgGCguggGCCGCGGaaUCggagUCGGCCGa -3'
miRNA:   3'- -CUCCAUG----UGa---UGGCGCC--AG----GGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 27287 0.66 0.757399
Target:  5'- gGGGGgagGgGCUGCCGCGaG-CUCGGCgGg -3'
miRNA:   3'- -CUCCa--UgUGAUGGCGC-CaGGGCCGgU- -5'
5255 5' -59.8 NC_001798.1 + 28048 0.66 0.748035
Target:  5'- --cGUACgACUcgggaACCGCGGUCgagagcgcgCCGGCCGc -3'
miRNA:   3'- cucCAUG-UGA-----UGGCGCCAG---------GGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 4079 0.66 0.748035
Target:  5'- -cGGU-CGCcGCgGgGGUCCgGGCCGg -3'
miRNA:   3'- cuCCAuGUGaUGgCgCCAGGgCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 29072 0.66 0.748035
Target:  5'- -uGGUAauuagaaACUuuuaAUagGCGGUCCCGGCCGc -3'
miRNA:   3'- cuCCAUg------UGA----UGg-CGCCAGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 33940 0.66 0.748035
Target:  5'- --cGUGC-CUACCuuucccuaGCGGcCCCGGCCc -3'
miRNA:   3'- cucCAUGuGAUGG--------CGCCaGGGCCGGu -5'
5255 5' -59.8 NC_001798.1 + 96156 0.66 0.748035
Target:  5'- cGGGUGacucgcCAUggcgGCCGCGccCCCGGCCGc -3'
miRNA:   3'- cUCCAU------GUGa---UGGCGCcaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 439 0.66 0.748035
Target:  5'- ----cGCGCgccacgggGCUGCGGUCCCgcGGCCGc -3'
miRNA:   3'- cuccaUGUGa-------UGGCGCCAGGG--CCGGU- -5'
5255 5' -59.8 NC_001798.1 + 61852 0.66 0.748035
Target:  5'- cGGGGaACGCggGCCGcCGGcccagCCCGGCg- -3'
miRNA:   3'- -CUCCaUGUGa-UGGC-GCCa----GGGCCGgu -5'
5255 5' -59.8 NC_001798.1 + 131060 0.66 0.738574
Target:  5'- cGAGGUcaccGCGCccACCGCGGcguaCaCGGCCGc -3'
miRNA:   3'- -CUCCA----UGUGa-UGGCGCCag--G-GCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 43166 0.66 0.729026
Target:  5'- ----cGCGCcGCCGCGGcaaacgCCUGGCCGg -3'
miRNA:   3'- cuccaUGUGaUGGCGCCa-----GGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 4452 0.66 0.729026
Target:  5'- cGGGUACGCcccgcggACCGCGGacgucgUCuCCGGuCCGc -3'
miRNA:   3'- cUCCAUGUGa------UGGCGCC------AG-GGCC-GGU- -5'
5255 5' -59.8 NC_001798.1 + 110537 0.67 0.719398
Target:  5'- gGGGGUcguuAUgAUUACCGCGGcCCUGGCgGg -3'
miRNA:   3'- -CUCCA----UG-UGAUGGCGCCaGGGCCGgU- -5'
5255 5' -59.8 NC_001798.1 + 37889 0.67 0.719398
Target:  5'- aAGGUGUugUaggGCCGCGGaugcCCCGaGCCAg -3'
miRNA:   3'- cUCCAUGugA---UGGCGCCa---GGGC-CGGU- -5'
5255 5' -59.8 NC_001798.1 + 31693 0.67 0.719398
Target:  5'- -cGGUGgACgcgcACCGCGcGcCCCGGUCGc -3'
miRNA:   3'- cuCCAUgUGa---UGGCGC-CaGGGCCGGU- -5'
5255 5' -59.8 NC_001798.1 + 9740 0.67 0.719398
Target:  5'- gGAGGUGCugUuccaccACCGC-GUUCCGGUa- -3'
miRNA:   3'- -CUCCAUGugA------UGGCGcCAGGGCCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.