miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 3' -53.4 NC_001798.1 + 51291 0.66 0.977722
Target:  5'- -cGCgGGGAgGcuaccuGGGccCGAUGGACCCa -3'
miRNA:   3'- gaCGgCCCUgU------UCUauGUUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 120184 0.66 0.977722
Target:  5'- -cGCCGGGcggcucGCAGuGAUAgAAgaggagcuCGGGCCCc -3'
miRNA:   3'- gaCGGCCC------UGUU-CUAUgUU--------GCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 2961 0.66 0.977722
Target:  5'- -aGgCGGGGCGcgucGGcGUGCGGCGGggcggccgGCCCg -3'
miRNA:   3'- gaCgGCCCUGU----UC-UAUGUUGCC--------UGGG- -5'
5259 3' -53.4 NC_001798.1 + 10916 0.66 0.975249
Target:  5'- -gGUCGGGGCAgaucGGAgacuagcugACGGCGGcgcaccaagucACCCg -3'
miRNA:   3'- gaCGGCCCUGU----UCUa--------UGUUGCC-----------UGGG- -5'
5259 3' -53.4 NC_001798.1 + 15210 0.66 0.975249
Target:  5'- -aGCCGGGGgGAGcguCcGCGGGUCCg -3'
miRNA:   3'- gaCGGCCCUgUUCuauGuUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 93244 0.66 0.975249
Target:  5'- cCUGCUugaGGGcCAGGAaACGcccGCGG-CCCg -3'
miRNA:   3'- -GACGG---CCCuGUUCUaUGU---UGCCuGGG- -5'
5259 3' -53.4 NC_001798.1 + 127176 0.66 0.975249
Target:  5'- uCUGgUGGGGCAcGGGUACAACcaGCCa -3'
miRNA:   3'- -GACgGCCCUGU-UCUAUGUUGccUGGg -5'
5259 3' -53.4 NC_001798.1 + 146427 0.66 0.975249
Target:  5'- -aGCCGGG-CAGaGUGCGGagccccCGGAgCCCg -3'
miRNA:   3'- gaCGGCCCuGUUcUAUGUU------GCCU-GGG- -5'
5259 3' -53.4 NC_001798.1 + 2464 0.66 0.975249
Target:  5'- cCUG-CGGGuCGGGGcccuCGGCGGGCCg -3'
miRNA:   3'- -GACgGCCCuGUUCUau--GUUGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 4440 0.66 0.975249
Target:  5'- -gGCCauGGGGuCcGGGUACGccccGCGGACCg -3'
miRNA:   3'- gaCGG--CCCU-GuUCUAUGU----UGCCUGGg -5'
5259 3' -53.4 NC_001798.1 + 94997 0.66 0.975249
Target:  5'- -cGCCuGGGccccGCAGGGcgGCG-CGGGCCUg -3'
miRNA:   3'- gaCGG-CCC----UGUUCUa-UGUuGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 128807 0.66 0.975249
Target:  5'- gUGCCGaGcCAAG-UACGcguucgaccccGCGGACCCc -3'
miRNA:   3'- gACGGCcCuGUUCuAUGU-----------UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 154143 0.66 0.975249
Target:  5'- -cGgCGGGACAuGGcggGCGGCuGGGCUCg -3'
miRNA:   3'- gaCgGCCCUGUuCUa--UGUUG-CCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 24674 0.66 0.972583
Target:  5'- gUGCCGGGGCuGGccGgAGCccGGCCCg -3'
miRNA:   3'- gACGGCCCUGuUCuaUgUUGc-CUGGG- -5'
5259 3' -53.4 NC_001798.1 + 44264 0.66 0.972583
Target:  5'- -cGCCGGGcucauACAGGGg--GGCGGugCUg -3'
miRNA:   3'- gaCGGCCC-----UGUUCUaugUUGCCugGG- -5'
5259 3' -53.4 NC_001798.1 + 83840 0.66 0.972583
Target:  5'- -gGCCGGuccccgucCGGGcgGCGcugGCGGGCCCg -3'
miRNA:   3'- gaCGGCCcu------GUUCuaUGU---UGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 86406 0.66 0.972583
Target:  5'- gUGCCGgucguGGACcAGcucgaGGCGGACCCc -3'
miRNA:   3'- gACGGC-----CCUGuUCuaug-UUGCCUGGG- -5'
5259 3' -53.4 NC_001798.1 + 86856 0.66 0.972583
Target:  5'- -gGCCGcGACAAGAcccgGCGGCGGuCgCg -3'
miRNA:   3'- gaCGGCcCUGUUCUa---UGUUGCCuGgG- -5'
5259 3' -53.4 NC_001798.1 + 141115 0.66 0.972583
Target:  5'- -cGCCGGGACGccgccGGcgcaucgGCAACcaGGGCCg -3'
miRNA:   3'- gaCGGCCCUGU-----UCua-----UGUUG--CCUGGg -5'
5259 3' -53.4 NC_001798.1 + 150841 0.66 0.972583
Target:  5'- -cGCCagGGGGCGccggucGGGUcGCGGCGGGCUg -3'
miRNA:   3'- gaCGG--CCCUGU------UCUA-UGUUGCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.