Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5259 | 3' | -53.4 | NC_001798.1 | + | 120184 | 0.66 | 0.977722 |
Target: 5'- -cGCCGGGcggcucGCAGuGAUAgAAgaggagcuCGGGCCCc -3' miRNA: 3'- gaCGGCCC------UGUU-CUAUgUU--------GCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 2961 | 0.66 | 0.977722 |
Target: 5'- -aGgCGGGGCGcgucGGcGUGCGGCGGggcggccgGCCCg -3' miRNA: 3'- gaCgGCCCUGU----UC-UAUGUUGCC--------UGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 51291 | 0.66 | 0.977722 |
Target: 5'- -cGCgGGGAgGcuaccuGGGccCGAUGGACCCa -3' miRNA: 3'- gaCGgCCCUgU------UCUauGUUGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 93244 | 0.66 | 0.975249 |
Target: 5'- cCUGCUugaGGGcCAGGAaACGcccGCGG-CCCg -3' miRNA: 3'- -GACGG---CCCuGUUCUaUGU---UGCCuGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 10916 | 0.66 | 0.975249 |
Target: 5'- -gGUCGGGGCAgaucGGAgacuagcugACGGCGGcgcaccaagucACCCg -3' miRNA: 3'- gaCGGCCCUGU----UCUa--------UGUUGCC-----------UGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 15210 | 0.66 | 0.975249 |
Target: 5'- -aGCCGGGGgGAGcguCcGCGGGUCCg -3' miRNA: 3'- gaCGGCCCUgUUCuauGuUGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 127176 | 0.66 | 0.975249 |
Target: 5'- uCUGgUGGGGCAcGGGUACAACcaGCCa -3' miRNA: 3'- -GACgGCCCUGU-UCUAUGUUGccUGGg -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 146427 | 0.66 | 0.975249 |
Target: 5'- -aGCCGGG-CAGaGUGCGGagccccCGGAgCCCg -3' miRNA: 3'- gaCGGCCCuGUUcUAUGUU------GCCU-GGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 2464 | 0.66 | 0.975249 |
Target: 5'- cCUG-CGGGuCGGGGcccuCGGCGGGCCg -3' miRNA: 3'- -GACgGCCCuGUUCUau--GUUGCCUGGg -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 4440 | 0.66 | 0.975249 |
Target: 5'- -gGCCauGGGGuCcGGGUACGccccGCGGACCg -3' miRNA: 3'- gaCGG--CCCU-GuUCUAUGU----UGCCUGGg -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 94997 | 0.66 | 0.975249 |
Target: 5'- -cGCCuGGGccccGCAGGGcgGCG-CGGGCCUg -3' miRNA: 3'- gaCGG-CCC----UGUUCUa-UGUuGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 128807 | 0.66 | 0.975249 |
Target: 5'- gUGCCGaGcCAAG-UACGcguucgaccccGCGGACCCc -3' miRNA: 3'- gACGGCcCuGUUCuAUGU-----------UGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 154143 | 0.66 | 0.975249 |
Target: 5'- -cGgCGGGACAuGGcggGCGGCuGGGCUCg -3' miRNA: 3'- gaCgGCCCUGUuCUa--UGUUG-CCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 150841 | 0.66 | 0.972583 |
Target: 5'- -cGCCagGGGGCGccggucGGGUcGCGGCGGGCUg -3' miRNA: 3'- gaCGG--CCCUGU------UCUA-UGUUGCCUGGg -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 141115 | 0.66 | 0.972583 |
Target: 5'- -cGCCGGGACGccgccGGcgcaucgGCAACcaGGGCCg -3' miRNA: 3'- gaCGGCCCUGU-----UCua-----UGUUG--CCUGGg -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 86856 | 0.66 | 0.972583 |
Target: 5'- -gGCCGcGACAAGAcccgGCGGCGGuCgCg -3' miRNA: 3'- gaCGGCcCUGUUCUa---UGUUGCCuGgG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 86406 | 0.66 | 0.972583 |
Target: 5'- gUGCCGgucguGGACcAGcucgaGGCGGACCCc -3' miRNA: 3'- gACGGC-----CCUGuUCuaug-UUGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 83840 | 0.66 | 0.972583 |
Target: 5'- -gGCCGGuccccgucCGGGcgGCGcugGCGGGCCCg -3' miRNA: 3'- gaCGGCCcu------GUUCuaUGU---UGCCUGGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 44264 | 0.66 | 0.972583 |
Target: 5'- -cGCCGGGcucauACAGGGg--GGCGGugCUg -3' miRNA: 3'- gaCGGCCC-----UGUUCUaugUUGCCugGG- -5' |
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5259 | 3' | -53.4 | NC_001798.1 | + | 24674 | 0.66 | 0.972583 |
Target: 5'- gUGCCGGGGCuGGccGgAGCccGGCCCg -3' miRNA: 3'- gACGGCCCUGuUCuaUgUUGc-CUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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