miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5259 5' -69 NC_001798.1 + 73215 0.66 0.374497
Target:  5'- uCGCGCCUcggcguuucggccuuCCGCCgGCccgggggCCCCCGGGg- -3'
miRNA:   3'- uGCGUGGG---------------GGCGG-CGa------GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 29941 0.66 0.374497
Target:  5'- gACGCuugacggggccgACCCCCGgcCCGCUuaagcggucgggggaCCCCCguGGGCc -3'
miRNA:   3'- -UGCG------------UGGGGGC--GGCGA---------------GGGGG--CCCGa -5'
5259 5' -69 NC_001798.1 + 86880 0.66 0.371502
Target:  5'- uCGCGCUuuUCCGCCGCcgggaaCCCCGGcGUg -3'
miRNA:   3'- uGCGUGG--GGGCGGCGag----GGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 128159 0.66 0.371502
Target:  5'- uGCGCGgCCUgcugcgcggCGuCCGCUCCCCucuggccauCGGGCc -3'
miRNA:   3'- -UGCGUgGGG---------GC-GGCGAGGGG---------GCCCGa -5'
5259 5' -69 NC_001798.1 + 93292 0.66 0.371502
Target:  5'- gGCGUACCUggcgCgCGCCGCgggCCUCgUGGGCg -3'
miRNA:   3'- -UGCGUGGG----G-GCGGCGa--GGGG-GCCCGa -5'
5259 5' -69 NC_001798.1 + 26279 0.66 0.371502
Target:  5'- cCGCGCCUgCGCgCGCUggggCCUGGGCg -3'
miRNA:   3'- uGCGUGGGgGCG-GCGAgg--GGGCCCGa -5'
5259 5' -69 NC_001798.1 + 52753 0.66 0.371502
Target:  5'- cACGUggaccuucGCCCCgCGUC-CUCggcgCCCCGGGCg -3'
miRNA:   3'- -UGCG--------UGGGG-GCGGcGAG----GGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 68949 0.66 0.371502
Target:  5'- cCGCGCCCCgGcCCGCgUCCCgCCGuaguuGGUc -3'
miRNA:   3'- uGCGUGGGGgC-GGCG-AGGG-GGC-----CCGa -5'
5259 5' -69 NC_001798.1 + 104326 0.66 0.371502
Target:  5'- aGCGaugGCCUCCGCCGggacggCUCCCGGGa- -3'
miRNA:   3'- -UGCg--UGGGGGCGGCga----GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 7695 0.66 0.370756
Target:  5'- gGCGCACCUgcagaugCUGcCCGCggaCCaCCGGGCc -3'
miRNA:   3'- -UGCGUGGG-------GGC-GGCGag-GG-GGCCCGa -5'
5259 5' -69 NC_001798.1 + 126394 0.66 0.364086
Target:  5'- cCGCucguCUCgUCGCCGCucgUCCCCCGaGGCc -3'
miRNA:   3'- uGCGu---GGG-GGCGGCG---AGGGGGC-CCGa -5'
5259 5' -69 NC_001798.1 + 138145 0.66 0.364086
Target:  5'- -aGCugCUgCgGUCGCgCCCCCGGGUc -3'
miRNA:   3'- ugCGugGGgG-CGGCGaGGGGGCCCGa -5'
5259 5' -69 NC_001798.1 + 152655 0.66 0.364086
Target:  5'- gGCGCGgCCCUGaguggUGCccgCCCCCGGGg- -3'
miRNA:   3'- -UGCGUgGGGGCg----GCGa--GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 153047 0.66 0.364086
Target:  5'- cGCGCgguugGCCggCGCCGCcCCCUgGGGCg -3'
miRNA:   3'- -UGCG-----UGGggGCGGCGaGGGGgCCCGa -5'
5259 5' -69 NC_001798.1 + 47830 0.66 0.36335
Target:  5'- -gGCcccgGCCCCgCGCgCGCUccuccacCCCCCGGGg- -3'
miRNA:   3'- ugCG----UGGGG-GCG-GCGA-------GGGGGCCCga -5'
5259 5' -69 NC_001798.1 + 5015 0.66 0.36335
Target:  5'- cCGCugCUCCGCCGacaucgcCUCCgaCCGGGgUg -3'
miRNA:   3'- uGCGugGGGGCGGC-------GAGGg-GGCCCgA- -5'
5259 5' -69 NC_001798.1 + 121094 0.66 0.36335
Target:  5'- cACGCACCCCCcacccacGCCcCUUCCggcaCCGGGa- -3'
miRNA:   3'- -UGCGUGGGGG-------CGGcGAGGG----GGCCCga -5'
5259 5' -69 NC_001798.1 + 47890 0.66 0.36335
Target:  5'- uCGCACgCCCCuccCCGCggaCCCCCaaaaugacgcgcgGGGCg -3'
miRNA:   3'- uGCGUG-GGGGc--GGCGa--GGGGG-------------CCCGa -5'
5259 5' -69 NC_001798.1 + 91083 0.66 0.356773
Target:  5'- gGCGCGCCggaggcggCCGUCGUggaCCCCGGuGCg -3'
miRNA:   3'- -UGCGUGGg-------GGCGGCGag-GGGGCC-CGa -5'
5259 5' -69 NC_001798.1 + 62255 0.66 0.356773
Target:  5'- gAC-CGCCCCgaGCCGaucccaggCCCgCCGGGCg -3'
miRNA:   3'- -UGcGUGGGGg-CGGCga------GGG-GGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.