Results 1 - 20 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5259 | 5' | -69 | NC_001798.1 | + | 29941 | 0.66 | 0.374497 |
Target: 5'- gACGCuugacggggccgACCCCCGgcCCGCUuaagcggucgggggaCCCCCguGGGCc -3' miRNA: 3'- -UGCG------------UGGGGGC--GGCGA---------------GGGGG--CCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 73215 | 0.66 | 0.374497 |
Target: 5'- uCGCGCCUcggcguuucggccuuCCGCCgGCccgggggCCCCCGGGg- -3' miRNA: 3'- uGCGUGGG---------------GGCGG-CGa------GGGGGCCCga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 104326 | 0.66 | 0.371502 |
Target: 5'- aGCGaugGCCUCCGCCGggacggCUCCCGGGa- -3' miRNA: 3'- -UGCg--UGGGGGCGGCga----GGGGGCCCga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 68949 | 0.66 | 0.371502 |
Target: 5'- cCGCGCCCCgGcCCGCgUCCCgCCGuaguuGGUc -3' miRNA: 3'- uGCGUGGGGgC-GGCG-AGGG-GGC-----CCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 52753 | 0.66 | 0.371502 |
Target: 5'- cACGUggaccuucGCCCCgCGUC-CUCggcgCCCCGGGCg -3' miRNA: 3'- -UGCG--------UGGGG-GCGGcGAG----GGGGCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 26279 | 0.66 | 0.371502 |
Target: 5'- cCGCGCCUgCGCgCGCUggggCCUGGGCg -3' miRNA: 3'- uGCGUGGGgGCG-GCGAgg--GGGCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 93292 | 0.66 | 0.371502 |
Target: 5'- gGCGUACCUggcgCgCGCCGCgggCCUCgUGGGCg -3' miRNA: 3'- -UGCGUGGG----G-GCGGCGa--GGGG-GCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 128159 | 0.66 | 0.371502 |
Target: 5'- uGCGCGgCCUgcugcgcggCGuCCGCUCCCCucuggccauCGGGCc -3' miRNA: 3'- -UGCGUgGGG---------GC-GGCGAGGGG---------GCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 86880 | 0.66 | 0.371502 |
Target: 5'- uCGCGCUuuUCCGCCGCcgggaaCCCCGGcGUg -3' miRNA: 3'- uGCGUGG--GGGCGGCGag----GGGGCC-CGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 7695 | 0.66 | 0.370756 |
Target: 5'- gGCGCACCUgcagaugCUGcCCGCggaCCaCCGGGCc -3' miRNA: 3'- -UGCGUGGG-------GGC-GGCGag-GG-GGCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 153047 | 0.66 | 0.364086 |
Target: 5'- cGCGCgguugGCCggCGCCGCcCCCUgGGGCg -3' miRNA: 3'- -UGCG-----UGGggGCGGCGaGGGGgCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 126394 | 0.66 | 0.364086 |
Target: 5'- cCGCucguCUCgUCGCCGCucgUCCCCCGaGGCc -3' miRNA: 3'- uGCGu---GGG-GGCGGCG---AGGGGGC-CCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 138145 | 0.66 | 0.364086 |
Target: 5'- -aGCugCUgCgGUCGCgCCCCCGGGUc -3' miRNA: 3'- ugCGugGGgG-CGGCGaGGGGGCCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 152655 | 0.66 | 0.364086 |
Target: 5'- gGCGCGgCCCUGaguggUGCccgCCCCCGGGg- -3' miRNA: 3'- -UGCGUgGGGGCg----GCGa--GGGGGCCCga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 47830 | 0.66 | 0.36335 |
Target: 5'- -gGCcccgGCCCCgCGCgCGCUccuccacCCCCCGGGg- -3' miRNA: 3'- ugCG----UGGGG-GCG-GCGA-------GGGGGCCCga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 5015 | 0.66 | 0.36335 |
Target: 5'- cCGCugCUCCGCCGacaucgcCUCCgaCCGGGgUg -3' miRNA: 3'- uGCGugGGGGCGGC-------GAGGg-GGCCCgA- -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 121094 | 0.66 | 0.36335 |
Target: 5'- cACGCACCCCCcacccacGCCcCUUCCggcaCCGGGa- -3' miRNA: 3'- -UGCGUGGGGG-------CGGcGAGGG----GGCCCga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 47890 | 0.66 | 0.36335 |
Target: 5'- uCGCACgCCCCuccCCGCggaCCCCCaaaaugacgcgcgGGGCg -3' miRNA: 3'- uGCGUG-GGGGc--GGCGa--GGGGG-------------CCCGa -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 151086 | 0.66 | 0.356773 |
Target: 5'- cCGCccgACCCCCGcCCGC-CCCCCGc--- -3' miRNA: 3'- uGCG---UGGGGGC-GGCGaGGGGGCccga -5' |
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5259 | 5' | -69 | NC_001798.1 | + | 91083 | 0.66 | 0.356773 |
Target: 5'- gGCGCGCCggaggcggCCGUCGUggaCCCCGGuGCg -3' miRNA: 3'- -UGCGUGGg-------GGCGGCGag-GGGGCC-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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