miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 3' -56.6 NC_001798.1 + 21725 0.66 0.905214
Target:  5'- cGCAGccggugugcCCCUGgugcggcggcgaCCGGGACGcCGGCc -3'
miRNA:   3'- uCGUU---------GGGAUauag--------GGCCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 109930 0.66 0.904596
Target:  5'- uGGCcACCCgauccgacAUCCCGGcgGACGUcauGGCa -3'
miRNA:   3'- -UCGuUGGGaua-----UAGGGCC--CUGCG---CCG- -5'
5263 3' -56.6 NC_001798.1 + 3295 0.66 0.904596
Target:  5'- cGGCGACgCCgccg-CCgacggcaaCGGGGCGgCGGCg -3'
miRNA:   3'- -UCGUUG-GGauauaGG--------GCCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 16418 0.66 0.904596
Target:  5'- -aCGACCCgcacGUCUUugGGGACGgCGGCu -3'
miRNA:   3'- ucGUUGGGaua-UAGGG--CCCUGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 24307 0.66 0.904596
Target:  5'- cGCGGCgCUGa---CCGGGGCGCGa- -3'
miRNA:   3'- uCGUUGgGAUauagGGCCCUGCGCcg -5'
5263 3' -56.6 NC_001798.1 + 70577 0.66 0.904596
Target:  5'- cGGCGGCCCUGggg-CCGGuGCGCGuccGCc -3'
miRNA:   3'- -UCGUUGGGAUauagGGCCcUGCGC---CG- -5'
5263 3' -56.6 NC_001798.1 + 122055 0.66 0.904596
Target:  5'- gGGgAGCCCUGgg-CgCGucGGACGCGGa -3'
miRNA:   3'- -UCgUUGGGAUauaGgGC--CCUGCGCCg -5'
5263 3' -56.6 NC_001798.1 + 154104 0.66 0.904596
Target:  5'- cGCGGCCggcg--CCgGGGACcccgGCGGCg -3'
miRNA:   3'- uCGUUGGgauauaGGgCCCUG----CGCCG- -5'
5263 3' -56.6 NC_001798.1 + 85797 0.66 0.903354
Target:  5'- cGgGACCCUGgccUCCgGGGGCGaugacgggggggGGCg -3'
miRNA:   3'- uCgUUGGGAUau-AGGgCCCUGCg-----------CCG- -5'
5263 3' -56.6 NC_001798.1 + 16174 0.66 0.903354
Target:  5'- gGGCGGCCCgcggggaCCgggGGGACGCacgGGCc -3'
miRNA:   3'- -UCGUUGGGauauag-GG---CCCUGCG---CCG- -5'
5263 3' -56.6 NC_001798.1 + 22880 0.66 0.898295
Target:  5'- cGCGGCCCggg--UUCGGGugGCacGGUg -3'
miRNA:   3'- uCGUUGGGauauaGGGCCCugCG--CCG- -5'
5263 3' -56.6 NC_001798.1 + 23608 0.66 0.898295
Target:  5'- gGGCcgAGCCCgccccggCCCGGaccccCGCGGCg -3'
miRNA:   3'- -UCG--UUGGGauaua--GGGCCcu---GCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 23648 0.66 0.898295
Target:  5'- gGGCcGCCUggagcgcCgCCGGGcccGCGCGGCg -3'
miRNA:   3'- -UCGuUGGGauaua--G-GGCCC---UGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 34588 0.66 0.898295
Target:  5'- cGCGGCgCggcGUCUCgguGGGACGCGGg -3'
miRNA:   3'- uCGUUGgGauaUAGGG---CCCUGCGCCg -5'
5263 3' -56.6 NC_001798.1 + 66036 0.66 0.898295
Target:  5'- cGCAugCCgcggGUcgCCCGGcACGCcagaaacccGGCg -3'
miRNA:   3'- uCGUugGGa---UAuaGGGCCcUGCG---------CCG- -5'
5263 3' -56.6 NC_001798.1 + 96946 0.66 0.898295
Target:  5'- gAGC-GCUCUGUGUgCUGGaccaGGCGCuGGCg -3'
miRNA:   3'- -UCGuUGGGAUAUAgGGCC----CUGCG-CCG- -5'
5263 3' -56.6 NC_001798.1 + 118669 0.66 0.898295
Target:  5'- cGCcGCCagCUGgcgCUCGcGGACGUGGCg -3'
miRNA:   3'- uCGuUGG--GAUauaGGGC-CCUGCGCCG- -5'
5263 3' -56.6 NC_001798.1 + 78312 0.66 0.891765
Target:  5'- cGCGGCCCggaAUGaCCCGGaGGCcaccGCGGa -3'
miRNA:   3'- uCGUUGGGa--UAUaGGGCC-CUG----CGCCg -5'
5263 3' -56.6 NC_001798.1 + 75982 0.66 0.891765
Target:  5'- uGCccguGCCCgccgcCCCGGG-CGcCGGCg -3'
miRNA:   3'- uCGu---UGGGauauaGGGCCCuGC-GCCG- -5'
5263 3' -56.6 NC_001798.1 + 75452 0.66 0.891765
Target:  5'- cGCAGgCCgggGUGgccggCCCGGc-CGCGGCc -3'
miRNA:   3'- uCGUUgGGa--UAUa----GGGCCcuGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.