miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 102394 0.66 0.585196
Target:  5'- uCGGCGGcgauGGCCCCC-ACCaGcGCGGcgaUCUg -3'
miRNA:   3'- -GCCGCC----CCGGGGGcUGG-CuUGCC---AGA- -5'
5263 5' -64.6 NC_001798.1 + 73087 0.66 0.585196
Target:  5'- --cUGGGGCCCCUGggucaGCCG-ACGGUg- -3'
miRNA:   3'- gccGCCCCGGGGGC-----UGGCuUGCCAga -5'
5263 5' -64.6 NC_001798.1 + 15270 0.66 0.585196
Target:  5'- gGGCGGuGCCCCgGGuuCCGGGCguggcgguGGUCg -3'
miRNA:   3'- gCCGCCcCGGGGgCU--GGCUUG--------CCAGa -5'
5263 5' -64.6 NC_001798.1 + 117522 0.66 0.585196
Target:  5'- cCGGCuGGGGCCggCCCaGCCccuccCGGUCUu -3'
miRNA:   3'- -GCCG-CCCCGG--GGGcUGGcuu--GCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 31997 0.66 0.58425
Target:  5'- gCGGCGccgcgccGGGCCCCgGACuCGGAcuCGGg-- -3'
miRNA:   3'- -GCCGC-------CCCGGGGgCUG-GCUU--GCCaga -5'
5263 5' -64.6 NC_001798.1 + 4846 0.66 0.582357
Target:  5'- gCGGCGGGGCgaCgGuCCGGguucggggugggcgGCGGUCc -3'
miRNA:   3'- -GCCGCCCCGggGgCuGGCU--------------UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 153166 0.66 0.575745
Target:  5'- uCGGagcucCGGGGCuCCgCCGGCCGAGgccgcccucgcCGGUUc -3'
miRNA:   3'- -GCC-----GCCCCG-GG-GGCUGGCUU-----------GCCAGa -5'
5263 5' -64.6 NC_001798.1 + 140216 0.66 0.575745
Target:  5'- uGcGUGGGGUCgCCGACCcaGACGGcCUc -3'
miRNA:   3'- gC-CGCCCCGGgGGCUGGc-UUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 9152 0.66 0.575745
Target:  5'- gGGCGcGGcGCCgCCCGcGCCGGggggcAgGGUCUc -3'
miRNA:   3'- gCCGC-CC-CGG-GGGC-UGGCU-----UgCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 2430 0.66 0.575745
Target:  5'- uGGCuGGGCCCCggCGGCUG-GCGG-Cg -3'
miRNA:   3'- gCCGcCCCGGGG--GCUGGCuUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 27204 0.66 0.566328
Target:  5'- gGGCGGGggaaGCCCCCGggGCgGGgcGCGGg-- -3'
miRNA:   3'- gCCGCCC----CGGGGGC--UGgCU--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 46015 0.66 0.566328
Target:  5'- gGGCGuGGGUCCCCGcgaCGAGCaG-CUg -3'
miRNA:   3'- gCCGC-CCCGGGGGCug-GCUUGcCaGA- -5'
5263 5' -64.6 NC_001798.1 + 51751 0.66 0.566328
Target:  5'- uCGGCGGGcaaaaaccaGCCCCUcccGCgCGAugGGUUUu -3'
miRNA:   3'- -GCCGCCC---------CGGGGGc--UG-GCUugCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 68378 0.66 0.566328
Target:  5'- gCGGUaGGGcGCCCCCGcagauCCGGcugccaGCGGUa- -3'
miRNA:   3'- -GCCG-CCC-CGGGGGCu----GGCU------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 108489 0.66 0.565388
Target:  5'- aGGCGGGGCccacgucccguccCCCCG-CCGA--GGUg- -3'
miRNA:   3'- gCCGCCCCG-------------GGGGCuGGCUugCCAga -5'
5263 5' -64.6 NC_001798.1 + 41442 0.66 0.556951
Target:  5'- gGGCguggGGGGUccaugCCCCG-CCGGgggggGCGGUCg -3'
miRNA:   3'- gCCG----CCCCG-----GGGGCuGGCU-----UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 142720 0.66 0.556951
Target:  5'- gCGGCGacGGCaCCgCCGGgcgaaCGAACGGUCa -3'
miRNA:   3'- -GCCGCc-CCG-GG-GGCUg----GCUUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 60632 0.66 0.556016
Target:  5'- gCGGUGGGuccGCCCCauCGAUagcgacugaacugCGAAUGGUCg -3'
miRNA:   3'- -GCCGCCC---CGGGG--GCUG-------------GCUUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 2611 0.66 0.554146
Target:  5'- gGcGCGGGGCgccgcccggcggcgCCCUGGCCgGGGCGGggCUc -3'
miRNA:   3'- gC-CGCCCCG--------------GGGGCUGG-CUUGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 91205 0.66 0.547619
Target:  5'- cCGGCccgaGGGCCUuuGGCUGcguucCGGUCUg -3'
miRNA:   3'- -GCCGc---CCCGGGggCUGGCuu---GCCAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.