miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 115529 0.66 0.940939
Target:  5'- ----cGUCGcGGCC-CCGGCCgGCCccGg -3'
miRNA:   3'- uuuuuUAGC-CCGGaGGCCGG-UGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 98660 0.66 0.940939
Target:  5'- cGGGGGUCccGCCUcCCGGCCGCCc-- -3'
miRNA:   3'- uUUUUUAGccCGGA-GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 48160 0.66 0.940939
Target:  5'- ---cGGUCGGGCgC-CUGGCgGCCAc- -3'
miRNA:   3'- uuuuUUAGCCCG-GaGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 121992 0.66 0.940939
Target:  5'- ------aCGcGGCCUCCGGCguCGCCu-- -3'
miRNA:   3'- uuuuuuaGC-CCGGAGGCCG--GUGGuac -5'
5267 3' -54.4 NC_001798.1 + 120683 0.66 0.940939
Target:  5'- gAAGGAGUCGGGCagaaacagaUCGGCCGuCCGg- -3'
miRNA:   3'- -UUUUUUAGCCCGga-------GGCCGGU-GGUac -5'
5267 3' -54.4 NC_001798.1 + 80838 0.66 0.930915
Target:  5'- uGAGAcgUGGGCCgUCGGCCuccuCCAc- -3'
miRNA:   3'- uUUUUuaGCCCGGaGGCCGGu---GGUac -5'
5267 3' -54.4 NC_001798.1 + 125861 0.66 0.925527
Target:  5'- ----uGUUGGcGCCUUuaUGGCCGCCAa- -3'
miRNA:   3'- uuuuuUAGCC-CGGAG--GCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 80616 0.66 0.925527
Target:  5'- ------aCGuGGCCgugCUGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGC-CCGGa--GGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 25691 0.66 0.925527
Target:  5'- ------gCGGGCCcgccaCGGCCGCC-UGg -3'
miRNA:   3'- uuuuuuaGCCCGGag---GCCGGUGGuAC- -5'
5267 3' -54.4 NC_001798.1 + 102046 0.66 0.919888
Target:  5'- -------gGGGUCUCCGuGUCugCGUGg -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGugGUAC- -5'
5267 3' -54.4 NC_001798.1 + 4790 0.67 0.914599
Target:  5'- ----cGUCGGccucgucuucguucuCCUCCGGCCcACCGUGc -3'
miRNA:   3'- uuuuuUAGCCc--------------GGAGGCCGG-UGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 102352 0.67 0.913999
Target:  5'- ------cCGuGGUCUCCGGCgGCCGc- -3'
miRNA:   3'- uuuuuuaGC-CCGGAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 31669 0.67 0.913999
Target:  5'- ------cCGGGCCcgcgCCGcCCGCCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa---GGCcGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 153840 0.67 0.913999
Target:  5'- -------gGGGCCUCCGG-CGCCu-- -3'
miRNA:   3'- uuuuuuagCCCGGAGGCCgGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 24187 0.67 0.913999
Target:  5'- -----cUgGGGCCUggcgcacguggCGGCCGCCGUGg -3'
miRNA:   3'- uuuuuuAgCCCGGAg----------GCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 72111 0.67 0.910346
Target:  5'- -cAAAAUUGGGCgcgcugaucacccucCUcgaaCCGGCCACCcgGg -3'
miRNA:   3'- uuUUUUAGCCCG---------------GA----GGCCGGUGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 152364 0.67 0.907861
Target:  5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 104671 0.67 0.907861
Target:  5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3'
miRNA:   3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 65724 0.67 0.907861
Target:  5'- cAGGGAGUCGaGGaCCUUCagGGCCGgCAUGa -3'
miRNA:   3'- -UUUUUUAGC-CC-GGAGG--CCGGUgGUAC- -5'
5267 3' -54.4 NC_001798.1 + 3023 0.67 0.907861
Target:  5'- ------gCGGGCCgggcUCCGGCCAgCCccGg -3'
miRNA:   3'- uuuuuuaGCCCGG----AGGCCGGU-GGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.