miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5273 5' -59 NC_001798.1 + 131591 0.66 0.83656
Target:  5'- cGCGccaAUGGG-CUCGGGAaaaacUACCGCGCuGAu -3'
miRNA:   3'- -UGC---UGCUCaGGGCCCU-----AUGGCGCG-CU- -5'
5273 5' -59 NC_001798.1 + 2489 0.66 0.83656
Target:  5'- cCGGCGGGUCagcgccgCGGGGcgcggcgGCCGCgGCGGc -3'
miRNA:   3'- uGCUGCUCAGg------GCCCUa------UGGCG-CGCU- -5'
5273 5' -59 NC_001798.1 + 90644 0.66 0.83656
Target:  5'- uCGAaguGGUCCgCGGaGAUGCCGCG-GAa -3'
miRNA:   3'- uGCUgc-UCAGG-GCC-CUAUGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 78268 0.66 0.83656
Target:  5'- gGCGGCGuGcCCCuGGAccuggcgGCCGcCGCGGa -3'
miRNA:   3'- -UGCUGCuCaGGGcCCUa------UGGC-GCGCU- -5'
5273 5' -59 NC_001798.1 + 120394 0.66 0.834965
Target:  5'- -gGGCGAuGUCCgCGGGGgccgaucccgugAgCGCGCGGa -3'
miRNA:   3'- ugCUGCU-CAGG-GCCCUa-----------UgGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 25805 0.66 0.828517
Target:  5'- cCGugGAGuUCCUGGGGcugcugGCCgGCGCc- -3'
miRNA:   3'- uGCugCUC-AGGGCCCUa-----UGG-CGCGcu -5'
5273 5' -59 NC_001798.1 + 87927 0.66 0.828517
Target:  5'- gGCGAUGGcGUaCCCGGGAUccuCCGCcaGCu- -3'
miRNA:   3'- -UGCUGCU-CA-GGGCCCUAu--GGCG--CGcu -5'
5273 5' -59 NC_001798.1 + 93888 0.66 0.826071
Target:  5'- -gGACGGGUccgagaacaCCCGGaccaucaugcaggaGAcgUACCGCGCGGc -3'
miRNA:   3'- ugCUGCUCA---------GGGCC--------------CU--AUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 105192 0.66 0.820306
Target:  5'- gGCGGCGGGgCCCgcgguGGGcgACgGCGCu- -3'
miRNA:   3'- -UGCUGCUCaGGG-----CCCuaUGgCGCGcu -5'
5273 5' -59 NC_001798.1 + 109606 0.66 0.820306
Target:  5'- uACGcCGAGuuUCUCGGcg-GCCGCGCGc -3'
miRNA:   3'- -UGCuGCUC--AGGGCCcuaUGGCGCGCu -5'
5273 5' -59 NC_001798.1 + 24415 0.66 0.820306
Target:  5'- gGCGGCGGcGUCgCCGGccGAcgAgCGCGCGGu -3'
miRNA:   3'- -UGCUGCU-CAG-GGCC--CUa-UgGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 36283 0.66 0.820306
Target:  5'- gGCGGCGGGgg--GGGGUGCCGUGgGu -3'
miRNA:   3'- -UGCUGCUCagggCCCUAUGGCGCgCu -5'
5273 5' -59 NC_001798.1 + 136926 0.66 0.820306
Target:  5'- gACGAgcuCGaAGUCCCGGaGGU-CCGUgggGCGAa -3'
miRNA:   3'- -UGCU---GC-UCAGGGCC-CUAuGGCG---CGCU- -5'
5273 5' -59 NC_001798.1 + 149975 0.66 0.820306
Target:  5'- cCGACGGGggcgcggcgCCCGcGGAcGCCGgGgCGAg -3'
miRNA:   3'- uGCUGCUCa--------GGGC-CCUaUGGCgC-GCU- -5'
5273 5' -59 NC_001798.1 + 81178 0.66 0.811937
Target:  5'- cUGACGGGggagcuguUCCCGGGAcacccgguuUACCaGCGCc- -3'
miRNA:   3'- uGCUGCUC--------AGGGCCCU---------AUGG-CGCGcu -5'
5273 5' -59 NC_001798.1 + 111392 0.66 0.810244
Target:  5'- gACGGCGAGcUUuuGGGucgggcucaggGCCaGCGCGGc -3'
miRNA:   3'- -UGCUGCUC-AGggCCCua---------UGG-CGCGCU- -5'
5273 5' -59 NC_001798.1 + 48353 0.66 0.806841
Target:  5'- cGCGACcgcGGccgCCCGGGGccgccccgcggggcgUGCCGcCGCGAc -3'
miRNA:   3'- -UGCUGc--UCa--GGGCCCU---------------AUGGC-GCGCU- -5'
5273 5' -59 NC_001798.1 + 17653 0.66 0.803415
Target:  5'- aACGACGugcaGGUCCaggaGGGGUaggAUCGCGgGGu -3'
miRNA:   3'- -UGCUGC----UCAGGg---CCCUA---UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 32366 0.66 0.803415
Target:  5'- gGCGGCcccGAG-CCCGGG--GCC-CGCGAc -3'
miRNA:   3'- -UGCUG---CUCaGGGCCCuaUGGcGCGCU- -5'
5273 5' -59 NC_001798.1 + 43009 0.66 0.794748
Target:  5'- gACGGCcAGgccgCCCGGGGgga-GCGCGGg -3'
miRNA:   3'- -UGCUGcUCa---GGGCCCUauggCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.