miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 94542 0.66 0.937252
Target:  5'- cGCGggcGCGAGCGCCaacGCGUCCgaggcCGCc -3'
miRNA:   3'- -CGC---UGCUUGCGGccuUGCAGGa----GCGu -5'
5276 3' -56 NC_001798.1 + 153380 0.66 0.932382
Target:  5'- cGCcACGcGGCGCCGGAACcgGUCgcggucggcccgCUCGCGc -3'
miRNA:   3'- -CGcUGC-UUGCGGCCUUG--CAG------------GAGCGU- -5'
5276 3' -56 NC_001798.1 + 104648 0.66 0.932382
Target:  5'- aCGugGGugGCCaGGGcccCGUgCUCGUAg -3'
miRNA:   3'- cGCugCUugCGG-CCUu--GCAgGAGCGU- -5'
5276 3' -56 NC_001798.1 + 55912 0.66 0.932382
Target:  5'- gGCGACGAGCGCaaaGGccccGACGa--UCGCu -3'
miRNA:   3'- -CGCUGCUUGCGg--CC----UUGCaggAGCGu -5'
5276 3' -56 NC_001798.1 + 48867 0.66 0.932382
Target:  5'- cCGcCGGGCGCuCGGGcACGUCUcauUCGCc -3'
miRNA:   3'- cGCuGCUUGCG-GCCU-UGCAGG---AGCGu -5'
5276 3' -56 NC_001798.1 + 96667 0.66 0.932382
Target:  5'- aGCGGCGccacggccGCGCUGGAgcGCGUCCgggaGUu -3'
miRNA:   3'- -CGCUGCu-------UGCGGCCU--UGCAGGag--CGu -5'
5276 3' -56 NC_001798.1 + 125725 0.66 0.927282
Target:  5'- gGCGGCGAGaugaGCCGaGACG-CCgccaCGCGg -3'
miRNA:   3'- -CGCUGCUUg---CGGCcUUGCaGGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 2973 0.66 0.927282
Target:  5'- uCGGCGuGCGgCGGGGCGgccggCC-CGCGg -3'
miRNA:   3'- cGCUGCuUGCgGCCUUGCa----GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 51257 0.66 0.927282
Target:  5'- --cGCGGACGCCGGGACagcgCCaucaCGCGg -3'
miRNA:   3'- cgcUGCUUGCGGCCUUGca--GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 20871 0.66 0.927282
Target:  5'- cCGACGAGCuggggaggaCGGGGCGUCUgCGCu -3'
miRNA:   3'- cGCUGCUUGcg-------GCCUUGCAGGaGCGu -5'
5276 3' -56 NC_001798.1 + 97631 0.66 0.927282
Target:  5'- cGCGACGcgggcCGCCGcGGACGUgCgggagCGCc -3'
miRNA:   3'- -CGCUGCuu---GCGGC-CUUGCAgGa----GCGu -5'
5276 3' -56 NC_001798.1 + 143677 0.66 0.927282
Target:  5'- cGCGGCGAggaaAUGCUGGcACGUCCcaaaCGgGa -3'
miRNA:   3'- -CGCUGCU----UGCGGCCuUGCAGGa---GCgU- -5'
5276 3' -56 NC_001798.1 + 129674 0.66 0.926759
Target:  5'- cGCGugGucacccgGGCGCCGGGGCcccaGUaCCggcgCGCAu -3'
miRNA:   3'- -CGCugC-------UUGCGGCCUUG----CA-GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 85289 0.66 0.921949
Target:  5'- gGgGGCGGGgGCCGGG--GUCCgccCGCGg -3'
miRNA:   3'- -CgCUGCUUgCGGCCUugCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 83534 0.66 0.921949
Target:  5'- cGCGcaugcCGAGCGCCcGGACGUUgUCgGCGg -3'
miRNA:   3'- -CGCu----GCUUGCGGcCUUGCAGgAG-CGU- -5'
5276 3' -56 NC_001798.1 + 2564 0.66 0.916386
Target:  5'- aGgGGCGGcCGCgGGGcgggggGCGUCCgCGCGg -3'
miRNA:   3'- -CgCUGCUuGCGgCCU------UGCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 54187 0.66 0.916386
Target:  5'- gGCGGCGGuggacaGCCaGGAGCG-CUUCuGCAg -3'
miRNA:   3'- -CGCUGCUug----CGG-CCUUGCaGGAG-CGU- -5'
5276 3' -56 NC_001798.1 + 149398 0.66 0.916386
Target:  5'- cGCGGgGGGCGUCGGGuaguCGgggggCCUcaCGCAg -3'
miRNA:   3'- -CGCUgCUUGCGGCCUu---GCa----GGA--GCGU- -5'
5276 3' -56 NC_001798.1 + 149460 0.66 0.916386
Target:  5'- uGCGGCGGcuccACGCgGGGgccGCGgCC-CGCAg -3'
miRNA:   3'- -CGCUGCU----UGCGgCCU---UGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 102361 0.66 0.915817
Target:  5'- cCGGCGGcCGCCGGAAgcccaccCG-CCUgGCGg -3'
miRNA:   3'- cGCUGCUuGCGGCCUU-------GCaGGAgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.