miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 121122 0.66 0.982007
Target:  5'- -gCACcGGGAaGGGCucgcaccGCCGGCCg -3'
miRNA:   3'- uaGUGcUUCUgCCCGuuau---UGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 148305 0.66 0.982007
Target:  5'- --gGCGggGugGGGUGA-GugCGGUUg -3'
miRNA:   3'- uagUGCuuCugCCCGUUaUugGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 236 0.66 0.982007
Target:  5'- -gCGCGGcaGGACGGGgAcUAGCaGGCUg -3'
miRNA:   3'- uaGUGCU--UCUGCCCgUuAUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 1394 0.66 0.982007
Target:  5'- -cCACGuAGACGGGCcgc-AgCGGCg -3'
miRNA:   3'- uaGUGCuUCUGCCCGuuauUgGCCGg -5'
5276 5' -52.7 NC_001798.1 + 57331 0.66 0.982007
Target:  5'- gAUCugGAGGcggaacuccguGCGGGUggAGUugggaAACCGGCa -3'
miRNA:   3'- -UAGugCUUC-----------UGCCCG--UUA-----UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 65820 0.66 0.982007
Target:  5'- --gGCGAGGAUGGcGCucacguuGCCGGUg -3'
miRNA:   3'- uagUGCUUCUGCC-CGuuau---UGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 76466 0.66 0.982007
Target:  5'- cAUCaACGAccagcAGGCGcGGCGcagcucggGGCUGGCCg -3'
miRNA:   3'- -UAG-UGCU-----UCUGC-CCGUua------UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 97457 0.66 0.982007
Target:  5'- -cCGCGugcuGGCGcGGCugggGGCCGGCg -3'
miRNA:   3'- uaGUGCuu--CUGC-CCGuua-UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 116352 0.66 0.982007
Target:  5'- -aCGCGgcGGCGuGCAacGUGGCgaCGGCCg -3'
miRNA:   3'- uaGUGCuuCUGCcCGU--UAUUG--GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 33330 0.66 0.982007
Target:  5'- -aCAgGGAGGgGGGCccgaucgugcaGAgcacgcacgucUGGCCGGCCa -3'
miRNA:   3'- uaGUgCUUCUgCCCG-----------UU-----------AUUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 74355 0.66 0.98074
Target:  5'- --uGCGGuGGGCGGGCGccAUGGuguuuuuugugcccuCCGGCCc -3'
miRNA:   3'- uagUGCU-UCUGCCCGU--UAUU---------------GGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 146296 0.66 0.97986
Target:  5'- --aGCGggGAgUGGGCG---GCCGGgCg -3'
miRNA:   3'- uagUGCuuCU-GCCCGUuauUGGCCgG- -5'
5276 5' -52.7 NC_001798.1 + 9943 0.66 0.97986
Target:  5'- cAUCGCGgcGGgGGcGUAGUccuggaacAGCCGGCg -3'
miRNA:   3'- -UAGUGCuuCUgCC-CGUUA--------UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 24165 0.66 0.97986
Target:  5'- -cCAUGgcGGCGGGCcgcu-UCGGCUg -3'
miRNA:   3'- uaGUGCuuCUGCCCGuuauuGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 28625 0.66 0.97986
Target:  5'- --gACGggGGuccUGGGCGcgcgAGCgGGCCg -3'
miRNA:   3'- uagUGCuuCU---GCCCGUua--UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 26720 0.66 0.97986
Target:  5'- uUUAaGAcAGACGcGGCGAUGGCCGcGCg -3'
miRNA:   3'- uAGUgCU-UCUGC-CCGUUAUUGGC-CGg -5'
5276 5' -52.7 NC_001798.1 + 35383 0.66 0.97986
Target:  5'- uUUAau-GGAaGGGCGuggGGCCGGCCg -3'
miRNA:   3'- uAGUgcuUCUgCCCGUua-UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 55880 0.66 0.97986
Target:  5'- -cCACGAGGACGaGGgGGUAcgagaaccaACgCGGCg -3'
miRNA:   3'- uaGUGCUUCUGC-CCgUUAU---------UG-GCCGg -5'
5276 5' -52.7 NC_001798.1 + 100776 0.66 0.97986
Target:  5'- aGUCAUGGgaguagugggGGGCGGGUG----UCGGCCg -3'
miRNA:   3'- -UAGUGCU----------UCUGCCCGUuauuGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 109374 0.66 0.97986
Target:  5'- -cCGgGGAGcaGCGGGCu---GCgCGGCCg -3'
miRNA:   3'- uaGUgCUUC--UGCCCGuuauUG-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.