miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 5' -56.4 NC_001798.1 + 36594 0.66 0.91455
Target:  5'- cGGCCgGGCGGGggCgcgCGGCGgcCGGGCg -3'
miRNA:   3'- -UUGGgCUGCCCa-Ga--GCCGCa-GUUUGg -5'
5280 5' -56.4 NC_001798.1 + 38796 0.66 0.91455
Target:  5'- cGCUCGACGcGGU--UGGCGaggCGGGCCa -3'
miRNA:   3'- uUGGGCUGC-CCAgaGCCGCa--GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 129352 0.66 0.91455
Target:  5'- cGCCCGcCGGGcCU-GGCGgggccccCGGACCc -3'
miRNA:   3'- uUGGGCuGCCCaGAgCCGCa------GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 143311 0.66 0.91455
Target:  5'- -cCCCGGCGGGUCgcCGGCcaCGcucGACg -3'
miRNA:   3'- uuGGGCUGCCCAGa-GCCGcaGU---UUGg -5'
5280 5' -56.4 NC_001798.1 + 153307 0.66 0.91455
Target:  5'- gGGCCCGGgcuCGGG-CUCGGgccCGagcUCGGGCCu -3'
miRNA:   3'- -UUGGGCU---GCCCaGAGCC---GC---AGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 1392 0.66 0.91455
Target:  5'- cGCCacguaGACGGGcCgcagCGGCGcgccCAGGCCc -3'
miRNA:   3'- uUGGg----CUGCCCaGa---GCCGCa---GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 36510 0.66 0.91455
Target:  5'- cGGCCgGGCGGGggCgcgCGGCGgcCGGGCg -3'
miRNA:   3'- -UUGGgCUGCCCa-Ga--GCCGCa-GUUUGg -5'
5280 5' -56.4 NC_001798.1 + 36552 0.66 0.91455
Target:  5'- cGGCCgGGCGGGggCgcgCGGCGgcCGGGCg -3'
miRNA:   3'- -UUGGgCUGCCCa-Ga--GCCGCa-GUUUGg -5'
5280 5' -56.4 NC_001798.1 + 59701 0.66 0.90865
Target:  5'- cGCCCGucuuCGGGcgCUuggUGGCGUCGu-CCg -3'
miRNA:   3'- uUGGGCu---GCCCa-GA---GCCGCAGUuuGG- -5'
5280 5' -56.4 NC_001798.1 + 61874 0.66 0.90865
Target:  5'- cAGCCCGGCGGccccCUCGgGCGcgcccUCgAAGCCg -3'
miRNA:   3'- -UUGGGCUGCCca--GAGC-CGC-----AG-UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 71603 0.66 0.90865
Target:  5'- cGGCCUGuCGGG---CGGCGUCcucAGCCa -3'
miRNA:   3'- -UUGGGCuGCCCagaGCCGCAGu--UUGG- -5'
5280 5' -56.4 NC_001798.1 + 46570 0.66 0.90865
Target:  5'- cGACCCGGaGGGcCcCGGgGgCAAACCc -3'
miRNA:   3'- -UUGGGCUgCCCaGaGCCgCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 12025 0.66 0.902518
Target:  5'- cGCCaCGGCGGGg--CGGCGggggCAugcggucaguguGACCa -3'
miRNA:   3'- uUGG-GCUGCCCagaGCCGCa---GU------------UUGG- -5'
5280 5' -56.4 NC_001798.1 + 149240 0.66 0.902518
Target:  5'- uGGCCCG-CGGG----GGCGUCGccGGCCg -3'
miRNA:   3'- -UUGGGCuGCCCagagCCGCAGU--UUGG- -5'
5280 5' -56.4 NC_001798.1 + 4112 0.66 0.902518
Target:  5'- cGGCCCugGGCGGG-CUCGGcCGgggcGCCg -3'
miRNA:   3'- -UUGGG--CUGCCCaGAGCC-GCaguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 11656 0.66 0.902518
Target:  5'- -cCCCGGgggcggggguCGGGUCUCGGgGggaGGACg -3'
miRNA:   3'- uuGGGCU----------GCCCAGAGCCgCag-UUUGg -5'
5280 5' -56.4 NC_001798.1 + 4052 0.66 0.896158
Target:  5'- gGGCCCGGCGGcG-CUCcaGGCGgcccgCGGucGCCg -3'
miRNA:   3'- -UUGGGCUGCC-CaGAG--CCGCa----GUU--UGG- -5'
5280 5' -56.4 NC_001798.1 + 41544 0.66 0.894206
Target:  5'- -cCCCGGCGGGgcgCaccgcguaaauacaUCGGUGgagCGGACUg -3'
miRNA:   3'- uuGGGCUGCCCa--G--------------AGCCGCa--GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 153085 0.66 0.889573
Target:  5'- ---gCGGCGGGg--CGGCGcCGGGCCc -3'
miRNA:   3'- uuggGCUGCCCagaGCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 23519 0.66 0.889573
Target:  5'- cGCCgCgGGCGGGaccCUCGGCG-CGGACg -3'
miRNA:   3'- uUGG-G-CUGCCCa--GAGCCGCaGUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.