miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5282 3' -55.7 NC_001798.1 + 15053 0.66 0.915791
Target:  5'- cGGAUGGGcccgGGGCGcgcGGGGGGUGguuuguuGGGGu -3'
miRNA:   3'- -CUUACCU----UCCGC---UCCCCUACgu-----CCUC- -5'
5282 3' -55.7 NC_001798.1 + 27386 0.66 0.915204
Target:  5'- --cUGcGAGGGCGAGcGGuGGUGCgacuggcgucuucGGGGGg -3'
miRNA:   3'- cuuAC-CUUCCGCUC-CC-CUACG-------------UCCUC- -5'
5282 3' -55.7 NC_001798.1 + 35088 0.66 0.909816
Target:  5'- ---cGGGAGGCG-GGGGAaaaaaGgGGGAa -3'
miRNA:   3'- cuuaCCUUCCGCuCCCCUa----CgUCCUc -5'
5282 3' -55.7 NC_001798.1 + 72323 0.66 0.909816
Target:  5'- --cUGGc-GGCccGGGGGGugcUGCAGGAGc -3'
miRNA:   3'- cuuACCuuCCG--CUCCCCu--ACGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 73643 0.66 0.9036
Target:  5'- ---cGGuugauGGGCGGGGGGGUuCGGGcGg -3'
miRNA:   3'- cuuaCCu----UCCGCUCCCCUAcGUCCuC- -5'
5282 3' -55.7 NC_001798.1 + 148415 0.66 0.902965
Target:  5'- gGggUGGGcgccgGGGCGGGGGuGGgcacgggcguaagUGCGGGuGc -3'
miRNA:   3'- -CuuACCU-----UCCGCUCCC-CU-------------ACGUCCuC- -5'
5282 3' -55.7 NC_001798.1 + 13169 0.66 0.897146
Target:  5'- ----cGAAGGCGGGGGcGUGCAucaGGAa -3'
miRNA:   3'- cuuacCUUCCGCUCCCcUACGU---CCUc -5'
5282 3' -55.7 NC_001798.1 + 12030 0.66 0.897146
Target:  5'- cGGcgGGgcGGCGGGGGcAUGCGGu-- -3'
miRNA:   3'- -CUuaCCuuCCGCUCCCcUACGUCcuc -5'
5282 3' -55.7 NC_001798.1 + 8548 0.66 0.897146
Target:  5'- -cGUGGGucgcGGCGAGGGG-UGgGGGcGa -3'
miRNA:   3'- cuUACCUu---CCGCUCCCCuACgUCCuC- -5'
5282 3' -55.7 NC_001798.1 + 67710 0.66 0.897146
Target:  5'- -cGUGGGAGGCGGGGuGGGcgGUacgaccgaaAGGAc -3'
miRNA:   3'- cuUACCUUCCGCUCC-CCUa-CG---------UCCUc -5'
5282 3' -55.7 NC_001798.1 + 27530 0.66 0.891813
Target:  5'- ---gGGAAGGCagccccgcggcgcgcGGGGGGAggggcggcgcccGCGGGGGa -3'
miRNA:   3'- cuuaCCUUCCG---------------CUCCCCUa-----------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 153625 0.66 0.890457
Target:  5'- ---cGGAGGgGCGucAGGGGGUcGgAGGGGa -3'
miRNA:   3'- cuuaCCUUC-CGC--UCCCCUA-CgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 36090 0.66 0.890457
Target:  5'- ---aGGuGGGUGGGcGGGUGguGGGGg -3'
miRNA:   3'- cuuaCCuUCCGCUCcCCUACguCCUC- -5'
5282 3' -55.7 NC_001798.1 + 26905 0.66 0.890457
Target:  5'- ---gGGcGGGCGGGGGucGGgcggGCGGGGGu -3'
miRNA:   3'- cuuaCCuUCCGCUCCC--CUa---CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 14991 0.66 0.883536
Target:  5'- gGGcgGGggGGCGAGGc-GUGUuGGGGg -3'
miRNA:   3'- -CUuaCCuuCCGCUCCccUACGuCCUC- -5'
5282 3' -55.7 NC_001798.1 + 34721 0.66 0.883536
Target:  5'- aGAagGGAagGGGCGAGGGucggGCccGGGAGc -3'
miRNA:   3'- -CUuaCCU--UCCGCUCCCcua-CG--UCCUC- -5'
5282 3' -55.7 NC_001798.1 + 69639 0.66 0.883536
Target:  5'- ------cGGGCGAguuguggggGGGGGUGguGGAGg -3'
miRNA:   3'- cuuaccuUCCGCU---------CCCCUACguCCUC- -5'
5282 3' -55.7 NC_001798.1 + 59547 0.67 0.876387
Target:  5'- ---cGGAAGGCgGAGaGGGG-GCuGGGGc -3'
miRNA:   3'- cuuaCCUUCCG-CUC-CCCUaCGuCCUC- -5'
5282 3' -55.7 NC_001798.1 + 146096 0.67 0.87566
Target:  5'- aGGcgGGcGGGCGAaggaaggGGGGGUGguGGcGg -3'
miRNA:   3'- -CUuaCCuUCCGCU-------CCCCUACguCCuC- -5'
5282 3' -55.7 NC_001798.1 + 72 0.67 0.869017
Target:  5'- gGGcgGcGgcGGCGGGcGGGcgGCAGGGc -3'
miRNA:   3'- -CUuaC-CuuCCGCUC-CCCuaCGUCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.