Results 1 - 20 of 163 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5285 | 5' | -60 | NC_001798.1 | + | 39573 | 0.66 | 0.810264 |
Target: 5'- uCCGCGCCgACGCGGgguGGcgacccccuuGGuuGuGGGc -3' miRNA: 3'- -GGCGCGGgUGCGCCau-CU----------CCuuC-CCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 39537 | 0.66 | 0.810264 |
Target: 5'- gCCGCGCCU-CGCcGUGGGuGGcgccGGGGc -3' miRNA: 3'- -GGCGCGGGuGCGcCAUCU-CCuu--CCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 10883 | 0.66 | 0.810264 |
Target: 5'- cCCGCGagCCAUGUucgGGUGGcAGGAGccgucggucGGGGc -3' miRNA: 3'- -GGCGCg-GGUGCG---CCAUC-UCCUU---------CCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 5031 | 0.66 | 0.810264 |
Target: 5'- aUCGCcUCCGacCGgGGUGugcGGGGggGGGGu -3' miRNA: 3'- -GGCGcGGGU--GCgCCAU---CUCCuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 1967 | 0.66 | 0.810264 |
Target: 5'- gCGCGCCCAgCGCcg-AGAcGucGGGGg -3' miRNA: 3'- gGCGCGGGU-GCGccaUCUcCuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 9083 | 0.66 | 0.801806 |
Target: 5'- -gGCGUCCACG-GcGUGGAGGGccacGGGa -3' miRNA: 3'- ggCGCGGGUGCgC-CAUCUCCUu---CCCc -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 40447 | 0.66 | 0.801806 |
Target: 5'- -gGUGCggaagCACGCGGUAGGGu--GGGGu -3' miRNA: 3'- ggCGCGg----GUGCGCCAUCUCcuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 51015 | 0.66 | 0.801806 |
Target: 5'- aCGaGCCCGaggGCGGUGGAgucGGGuuaauGGGGu -3' miRNA: 3'- gGCgCGGGUg--CGCCAUCU---CCUu----CCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 64111 | 0.66 | 0.801806 |
Target: 5'- gCCGCcccgGCCCccgacGCGUGGguaucUAGGGGGucggugcucgcGGGGGa -3' miRNA: 3'- -GGCG----CGGG-----UGCGCC-----AUCUCCU-----------UCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 36491 | 0.66 | 0.793208 |
Target: 5'- -gGCGCCggcgcgACGCGGgcGGccGGgcGGGGg -3' miRNA: 3'- ggCGCGGg-----UGCGCCauCU--CCuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 36692 | 0.66 | 0.793208 |
Target: 5'- aCGUGUgCGCaGgGGaggGGAGGAcgcGGGGGa -3' miRNA: 3'- gGCGCGgGUG-CgCCa--UCUCCU---UCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 39623 | 0.66 | 0.793208 |
Target: 5'- aCGCGCCgGCGgGGUuuuGGuguGGAGucggcgccgccGGGGc -3' miRNA: 3'- gGCGCGGgUGCgCCA---UCu--CCUU-----------CCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 46997 | 0.66 | 0.793208 |
Target: 5'- gUCGCGCUCGuCGCGGgcGuGcccGGGGa -3' miRNA: 3'- -GGCGCGGGU-GCGCCauCuCcuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 93266 | 0.66 | 0.793208 |
Target: 5'- cCCGCgGCCCGCGCcGgcGccGucGGGGc -3' miRNA: 3'- -GGCG-CGGGUGCGcCauCucCuuCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 95521 | 0.66 | 0.793208 |
Target: 5'- cCCGCGCCCuggaGCGCGGgcauGGcGAGuGGu -3' miRNA: 3'- -GGCGCGGG----UGCGCCaucuCC-UUC-CCc -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 153486 | 0.66 | 0.792341 |
Target: 5'- aCGCGCggcgagaagcacaCC-UGCGGgcGGGGAgacacGGGGGu -3' miRNA: 3'- gGCGCG-------------GGuGCGCCauCUCCU-----UCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 98511 | 0.66 | 0.791472 |
Target: 5'- aCGCGCCCccguaggcccgccauGCGCGGgggGGGcuugauuugcgcgcuGGucguGGGGGc -3' miRNA: 3'- gGCGCGGG---------------UGCGCCa--UCU---------------CCu---UCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 79187 | 0.66 | 0.784477 |
Target: 5'- gUGCGCCCGgcUGCGGgauGAGGuggugcgcAGGGu -3' miRNA: 3'- gGCGCGGGU--GCGCCau-CUCCu-------UCCCc -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 66447 | 0.66 | 0.784477 |
Target: 5'- -gGCGUgUAUGCGuUGGGGGGgaccGGGGGa -3' miRNA: 3'- ggCGCGgGUGCGCcAUCUCCU----UCCCC- -5' |
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5285 | 5' | -60 | NC_001798.1 | + | 31854 | 0.66 | 0.784477 |
Target: 5'- gCCGCccCCCACGCcGcGGAGGggGcGGcGg -3' miRNA: 3'- -GGCGc-GGGUGCGcCaUCUCCuuC-CC-C- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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