miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 5' -60 NC_001798.1 + 39573 0.66 0.810264
Target:  5'- uCCGCGCCgACGCGGgguGGcgacccccuuGGuuGuGGGc -3'
miRNA:   3'- -GGCGCGGgUGCGCCau-CU----------CCuuC-CCC- -5'
5285 5' -60 NC_001798.1 + 39537 0.66 0.810264
Target:  5'- gCCGCGCCU-CGCcGUGGGuGGcgccGGGGc -3'
miRNA:   3'- -GGCGCGGGuGCGcCAUCU-CCuu--CCCC- -5'
5285 5' -60 NC_001798.1 + 10883 0.66 0.810264
Target:  5'- cCCGCGagCCAUGUucgGGUGGcAGGAGccgucggucGGGGc -3'
miRNA:   3'- -GGCGCg-GGUGCG---CCAUC-UCCUU---------CCCC- -5'
5285 5' -60 NC_001798.1 + 5031 0.66 0.810264
Target:  5'- aUCGCcUCCGacCGgGGUGugcGGGGggGGGGu -3'
miRNA:   3'- -GGCGcGGGU--GCgCCAU---CUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 1967 0.66 0.810264
Target:  5'- gCGCGCCCAgCGCcg-AGAcGucGGGGg -3'
miRNA:   3'- gGCGCGGGU-GCGccaUCUcCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 9083 0.66 0.801806
Target:  5'- -gGCGUCCACG-GcGUGGAGGGccacGGGa -3'
miRNA:   3'- ggCGCGGGUGCgC-CAUCUCCUu---CCCc -5'
5285 5' -60 NC_001798.1 + 40447 0.66 0.801806
Target:  5'- -gGUGCggaagCACGCGGUAGGGu--GGGGu -3'
miRNA:   3'- ggCGCGg----GUGCGCCAUCUCcuuCCCC- -5'
5285 5' -60 NC_001798.1 + 51015 0.66 0.801806
Target:  5'- aCGaGCCCGaggGCGGUGGAgucGGGuuaauGGGGu -3'
miRNA:   3'- gGCgCGGGUg--CGCCAUCU---CCUu----CCCC- -5'
5285 5' -60 NC_001798.1 + 64111 0.66 0.801806
Target:  5'- gCCGCcccgGCCCccgacGCGUGGguaucUAGGGGGucggugcucgcGGGGGa -3'
miRNA:   3'- -GGCG----CGGG-----UGCGCC-----AUCUCCU-----------UCCCC- -5'
5285 5' -60 NC_001798.1 + 36491 0.66 0.793208
Target:  5'- -gGCGCCggcgcgACGCGGgcGGccGGgcGGGGg -3'
miRNA:   3'- ggCGCGGg-----UGCGCCauCU--CCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 36692 0.66 0.793208
Target:  5'- aCGUGUgCGCaGgGGaggGGAGGAcgcGGGGGa -3'
miRNA:   3'- gGCGCGgGUG-CgCCa--UCUCCU---UCCCC- -5'
5285 5' -60 NC_001798.1 + 39623 0.66 0.793208
Target:  5'- aCGCGCCgGCGgGGUuuuGGuguGGAGucggcgccgccGGGGc -3'
miRNA:   3'- gGCGCGGgUGCgCCA---UCu--CCUU-----------CCCC- -5'
5285 5' -60 NC_001798.1 + 46997 0.66 0.793208
Target:  5'- gUCGCGCUCGuCGCGGgcGuGcccGGGGa -3'
miRNA:   3'- -GGCGCGGGU-GCGCCauCuCcuuCCCC- -5'
5285 5' -60 NC_001798.1 + 93266 0.66 0.793208
Target:  5'- cCCGCgGCCCGCGCcGgcGccGucGGGGc -3'
miRNA:   3'- -GGCG-CGGGUGCGcCauCucCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 95521 0.66 0.793208
Target:  5'- cCCGCGCCCuggaGCGCGGgcauGGcGAGuGGu -3'
miRNA:   3'- -GGCGCGGG----UGCGCCaucuCC-UUC-CCc -5'
5285 5' -60 NC_001798.1 + 153486 0.66 0.792341
Target:  5'- aCGCGCggcgagaagcacaCC-UGCGGgcGGGGAgacacGGGGGu -3'
miRNA:   3'- gGCGCG-------------GGuGCGCCauCUCCU-----UCCCC- -5'
5285 5' -60 NC_001798.1 + 98511 0.66 0.791472
Target:  5'- aCGCGCCCccguaggcccgccauGCGCGGgggGGGcuugauuugcgcgcuGGucguGGGGGc -3'
miRNA:   3'- gGCGCGGG---------------UGCGCCa--UCU---------------CCu---UCCCC- -5'
5285 5' -60 NC_001798.1 + 79187 0.66 0.784477
Target:  5'- gUGCGCCCGgcUGCGGgauGAGGuggugcgcAGGGu -3'
miRNA:   3'- gGCGCGGGU--GCGCCau-CUCCu-------UCCCc -5'
5285 5' -60 NC_001798.1 + 66447 0.66 0.784477
Target:  5'- -gGCGUgUAUGCGuUGGGGGGgaccGGGGGa -3'
miRNA:   3'- ggCGCGgGUGCGCcAUCUCCU----UCCCC- -5'
5285 5' -60 NC_001798.1 + 31854 0.66 0.784477
Target:  5'- gCCGCccCCCACGCcGcGGAGGggGcGGcGg -3'
miRNA:   3'- -GGCGc-GGGUGCGcCaUCUCCuuC-CC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.