miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5298 5' -66.5 NC_001798.1 + 93931 0.66 0.494409
Target:  5'- --cGCGCGGCCaCCGaGCGcGUCaUGGCc -3'
miRNA:   3'- gcaCGCGCCGG-GGUcCGCcCAG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 5353 0.66 0.494409
Target:  5'- -aUGCGCGGCCCCGccccgacgcccGCGcGUCCGcGUc -3'
miRNA:   3'- gcACGCGCCGGGGUc----------CGCcCAGGC-CG- -5'
5298 5' -66.5 NC_001798.1 + 108839 0.66 0.494409
Target:  5'- cCGUGgGCGuCUggacgaCGGGCGGG-CUGGCg -3'
miRNA:   3'- -GCACgCGCcGGg-----GUCCGCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 25689 0.66 0.494409
Target:  5'- -cUGCGggcccgccaCGGCCgCCuGGGCGGGcaacuggaCCGGCg -3'
miRNA:   3'- gcACGC---------GCCGG-GG-UCCGCCCa-------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 4071 0.66 0.494409
Target:  5'- nCGgccCGCGGUCgCCGcGG-GGGUCCGGg -3'
miRNA:   3'- -GCac-GCGCCGG-GGU-CCgCCCAGGCCg -5'
5298 5' -66.5 NC_001798.1 + 153822 0.66 0.494409
Target:  5'- gCGgcagGCGCGGCgU---GCGGGgccUCCGGCg -3'
miRNA:   3'- -GCa---CGCGCCGgGgucCGCCC---AGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 37212 0.66 0.493521
Target:  5'- aCGgGCGCGGCgccggagcuuuggCCCAGGgGGGUUguuugUGGa -3'
miRNA:   3'- -GCaCGCGCCG-------------GGGUCCgCCCAG-----GCCg -5'
5298 5' -66.5 NC_001798.1 + 25663 0.66 0.485566
Target:  5'- -cUGCugGCGGCCCUGGGCaa--CCGGCu -3'
miRNA:   3'- gcACG--CGCCGGGGUCCGcccaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 9780 0.66 0.485566
Target:  5'- gGUGCugauggucauGUGGCCCCAGGCGuGGauaugaucgUCCa-- -3'
miRNA:   3'- gCACG----------CGCCGGGGUCCGC-CC---------AGGccg -5'
5298 5' -66.5 NC_001798.1 + 20949 0.66 0.485566
Target:  5'- uCGUGUugaGGC---GGGCGGGUCCGGg -3'
miRNA:   3'- -GCACGcg-CCGgggUCCGCCCAGGCCg -5'
5298 5' -66.5 NC_001798.1 + 26937 0.66 0.485566
Target:  5'- gCGgGCGgGGUCgggCGGGCGGGggUCgGGCg -3'
miRNA:   3'- -GCaCGCgCCGGg--GUCCGCCC--AGgCCG- -5'
5298 5' -66.5 NC_001798.1 + 4204 0.66 0.485566
Target:  5'- gCGUGgucUGCGGCgCU-GGCGGGggcgCgGGCg -3'
miRNA:   3'- -GCAC---GCGCCGgGGuCCGCCCa---GgCCG- -5'
5298 5' -66.5 NC_001798.1 + 86828 0.66 0.485566
Target:  5'- cCGUcGCucCGGCUCCcGGCccGGGcCCGGCc -3'
miRNA:   3'- -GCA-CGc-GCCGGGGuCCG--CCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 147174 0.66 0.4768
Target:  5'- --cGCcCGGCgCCGGGCGGaaggcgucccccGcCCGGCg -3'
miRNA:   3'- gcaCGcGCCGgGGUCCGCC------------CaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 49767 0.66 0.4768
Target:  5'- cCGUGCGgGGaguuCCCguGGa-GGcCCGGCg -3'
miRNA:   3'- -GCACGCgCC----GGGguCCgcCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 30930 0.66 0.4768
Target:  5'- gGUGaggGCGGCgggggUCGGGCGGGgggCgGGCg -3'
miRNA:   3'- gCACg--CGCCGg----GGUCCGCCCa--GgCCG- -5'
5298 5' -66.5 NC_001798.1 + 4843 0.66 0.4768
Target:  5'- --cGCGCGGCg--GGGCGacGGUCCGGg -3'
miRNA:   3'- gcaCGCGCCGgggUCCGC--CCAGGCCg -5'
5298 5' -66.5 NC_001798.1 + 74854 0.66 0.4768
Target:  5'- -cUGCG-GGUCCUggAGGUGGGggcagugCCGGUg -3'
miRNA:   3'- gcACGCgCCGGGG--UCCGCCCa------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2253 0.66 0.4768
Target:  5'- gCGgGCGC-GCCgCCgggGGGCGGGg-CGGCg -3'
miRNA:   3'- -GCaCGCGcCGG-GG---UCCGCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 125664 0.66 0.4768
Target:  5'- gCGgGgGCGGCUgaggUCAGGgGGGUCgGGg -3'
miRNA:   3'- -GCaCgCGCCGG----GGUCCgCCCAGgCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.