miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 42292 0.66 0.652094
Target:  5'- -aCCgGCCGcACGCGGAgccgUCGGGg- -3'
miRNA:   3'- cgGGgCGGCcUGCGCCUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 2666 0.66 0.652094
Target:  5'- cGCCUC-CCGcGGCGCGGAgg-CGGGc- -3'
miRNA:   3'- -CGGGGcGGC-CUGCGCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 16219 0.66 0.652094
Target:  5'- cGCgCCGCCuguggGGGgGCGGuggggCCGGGg- -3'
miRNA:   3'- -CGgGGCGG-----CCUgCGCCuaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 91787 0.66 0.65112
Target:  5'- cGCCCCcugccgaugacgcGCgGGGCGUGGGgaCCGuGGg- -3'
miRNA:   3'- -CGGGG-------------CGgCCUGCGCCUaaGGC-CCaa -5'
5299 5' -62.6 NC_001798.1 + 54887 0.66 0.649173
Target:  5'- cCCCCGCCcccuccgaGGACGCaGAUUCCauuuacgagucgguGGGc- -3'
miRNA:   3'- cGGGGCGG--------CCUGCGcCUAAGG--------------CCCaa -5'
5299 5' -62.6 NC_001798.1 + 101799 0.66 0.642354
Target:  5'- gGCCUccgCGCCGGGCGCcucGGG-UUgGGGUa -3'
miRNA:   3'- -CGGG---GCGGCCUGCG---CCUaAGgCCCAa -5'
5299 5' -62.6 NC_001798.1 + 48099 0.66 0.642354
Target:  5'- aGCCCCacggcGCCguGGACccccCGGGUggCCGGGUUc -3'
miRNA:   3'- -CGGGG-----CGG--CCUGc---GCCUAa-GGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 28615 0.66 0.642354
Target:  5'- cGCCUgGCCcGACGgGGGUcCUGGGc- -3'
miRNA:   3'- -CGGGgCGGcCUGCgCCUAaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 95286 0.66 0.642354
Target:  5'- uGCCCCaggGCCGGguuuguguGCGCGGcgUCgagucuCGGGg- -3'
miRNA:   3'- -CGGGG---CGGCC--------UGCGCCuaAG------GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 11645 0.66 0.642354
Target:  5'- cGUCCCuguguccCCGGGgGCGGGggUCGGGUc -3'
miRNA:   3'- -CGGGGc------GGCCUgCGCCUaaGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 34874 0.66 0.642354
Target:  5'- cGCCCggCGCCGGGCGgcuaccCGGGacccccggCCGGGa- -3'
miRNA:   3'- -CGGG--GCGGCCUGC------GCCUaa------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 43463 0.66 0.642354
Target:  5'- aCCCCGCaguacgcgggggCGGGCGUGaGGgccgCCGGGg- -3'
miRNA:   3'- cGGGGCG------------GCCUGCGC-CUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 111598 0.66 0.632607
Target:  5'- gGCCCgGCgGGGCGgccuccUGGAgccCCGGGg- -3'
miRNA:   3'- -CGGGgCGgCCUGC------GCCUaa-GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 36061 0.66 0.632607
Target:  5'- cGUgCUGCCGGAggcUGCGGGcgCgGGGUa -3'
miRNA:   3'- -CGgGGCGGCCU---GCGCCUaaGgCCCAa -5'
5299 5' -62.6 NC_001798.1 + 2071 0.66 0.62286
Target:  5'- -gCCCGCCGcGCucgGCGGAccacUCCGGGg- -3'
miRNA:   3'- cgGGGCGGCcUG---CGCCUa---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 129295 0.66 0.62286
Target:  5'- gGCaCCGCgCGGGCGCGGAgga-GGGc- -3'
miRNA:   3'- -CGgGGCG-GCCUGCGCCUaaggCCCaa -5'
5299 5' -62.6 NC_001798.1 + 134394 0.66 0.613119
Target:  5'- cGCCCUcCUGGACGUGGAggCCaaGGUc -3'
miRNA:   3'- -CGGGGcGGCCUGCGCCUaaGGc-CCAa -5'
5299 5' -62.6 NC_001798.1 + 54731 0.66 0.613119
Target:  5'- -aCCUggggGCCGGACGCGGAggCCGa--- -3'
miRNA:   3'- cgGGG----CGGCCUGCGCCUaaGGCccaa -5'
5299 5' -62.6 NC_001798.1 + 22938 0.66 0.60728
Target:  5'- cGCCgCCGCCGaugccgugccgacgaGGCGgcccCGGcgUCCGGGg- -3'
miRNA:   3'- -CGG-GGCGGC---------------CUGC----GCCuaAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 16940 0.66 0.603391
Target:  5'- cGCCCC-CCGGGgggaGCGGggUCacuuGGGUg -3'
miRNA:   3'- -CGGGGcGGCCUg---CGCCuaAGg---CCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.