miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5301 5' -55.1 NC_001798.1 + 153844 0.66 0.938827
Target:  5'- cCUC-CGGCGccuuccCCCCGCCCuCGC-UCGg -3'
miRNA:   3'- -GAGuGUUGUuu----GGGGCGGG-GCGuAGU- -5'
5301 5' -55.1 NC_001798.1 + 116625 0.66 0.938827
Target:  5'- aUCcCGugAccGACCCCGCCCacccgcuGCAUCc -3'
miRNA:   3'- gAGuGUugU--UUGGGGCGGGg------CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 48352 0.66 0.938827
Target:  5'- -aCGCGACcgcGGCCgcccggggCCGCCCCGCGgggCGu -3'
miRNA:   3'- gaGUGUUGu--UUGG--------GGCGGGGCGUa--GU- -5'
5301 5' -55.1 NC_001798.1 + 29021 0.66 0.938827
Target:  5'- -gCGCGGgccCGGACUCCGCCCCgGCGa-- -3'
miRNA:   3'- gaGUGUU---GUUUGGGGCGGGG-CGUagu -5'
5301 5' -55.1 NC_001798.1 + 97862 0.66 0.938827
Target:  5'- gUCAuCGACAAccGCgCCGCCCCggGCGUg- -3'
miRNA:   3'- gAGU-GUUGUU--UGgGGCGGGG--CGUAgu -5'
5301 5' -55.1 NC_001798.1 + 75145 0.66 0.933911
Target:  5'- --gACGACGGGCCCgCGagCCCGuCGUCGc -3'
miRNA:   3'- gagUGUUGUUUGGG-GCg-GGGC-GUAGU- -5'
5301 5' -55.1 NC_001798.1 + 59245 0.66 0.933911
Target:  5'- -cCGCGACAcAUCCCGCaCCCGgGg-- -3'
miRNA:   3'- gaGUGUUGUuUGGGGCG-GGGCgUagu -5'
5301 5' -55.1 NC_001798.1 + 2884 0.66 0.933911
Target:  5'- -cCACGcGCAGGuCCCCGCgCaggCGCAUCAg -3'
miRNA:   3'- gaGUGU-UGUUU-GGGGCG-Gg--GCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 34800 0.66 0.933911
Target:  5'- -gCGCGGCccgGGGCCCCGgggcCCCCGCGc-- -3'
miRNA:   3'- gaGUGUUG---UUUGGGGC----GGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 32630 0.66 0.933406
Target:  5'- --uGCGugAGGCCCCccgacuacccgacGCCCCccGCGUCGg -3'
miRNA:   3'- gagUGUugUUUGGGG-------------CGGGG--CGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 54425 0.66 0.933406
Target:  5'- -aUACAACGGACCCgGCgcgacaacgcaccCCCGCcgCu -3'
miRNA:   3'- gaGUGUUGUUUGGGgCG-------------GGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 148226 0.66 0.928753
Target:  5'- -aCGC-GCGAGCCCCcucGCCCCGaugggaGUCu -3'
miRNA:   3'- gaGUGuUGUUUGGGG---CGGGGCg-----UAGu -5'
5301 5' -55.1 NC_001798.1 + 32035 0.66 0.928753
Target:  5'- -cCGCGgccACGGGCCgCuCGCCCCgGCGUCc -3'
miRNA:   3'- gaGUGU---UGUUUGG-G-GCGGGG-CGUAGu -5'
5301 5' -55.1 NC_001798.1 + 31607 0.66 0.928753
Target:  5'- -gCGCGucCGGAgUCCGCCCCGCGc-- -3'
miRNA:   3'- gaGUGUu-GUUUgGGGCGGGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 18389 0.66 0.928753
Target:  5'- aCUUACGACAGGCCauuugCCGCgUCGCGc-- -3'
miRNA:   3'- -GAGUGUUGUUUGG-----GGCGgGGCGUagu -5'
5301 5' -55.1 NC_001798.1 + 28950 0.66 0.923351
Target:  5'- -cCGCGAgGgcccGGCgCCGCCCCGCcgCu -3'
miRNA:   3'- gaGUGUUgU----UUGgGGCGGGGCGuaGu -5'
5301 5' -55.1 NC_001798.1 + 146599 0.66 0.923351
Target:  5'- -cCGCGGCGccagcGGCCCaCGCCucccgCCGCAUUAg -3'
miRNA:   3'- gaGUGUUGU-----UUGGG-GCGG-----GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 96071 0.66 0.923351
Target:  5'- gUCA----GGGgCCCGCCgCCGCAUCAg -3'
miRNA:   3'- gAGUguugUUUgGGGCGG-GGCGUAGU- -5'
5301 5' -55.1 NC_001798.1 + 142538 0.66 0.923351
Target:  5'- --gACcACAccCCCCGcCCCCGUAUCc -3'
miRNA:   3'- gagUGuUGUuuGGGGC-GGGGCGUAGu -5'
5301 5' -55.1 NC_001798.1 + 110127 0.66 0.923351
Target:  5'- gUCACc-CAcACCCCcuuGCCCCGCGggaUCGg -3'
miRNA:   3'- gAGUGuuGUuUGGGG---CGGGGCGU---AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.