miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5302 5' -51.8 NC_001798.1 + 74700 0.66 0.994125
Target:  5'- aCCCAAAc-CGCCCccCCGAUgaUGUGUGg -3'
miRNA:   3'- -GGGUUUaaGUGGGcuGGCUA--GCACGC- -5'
5302 5' -51.8 NC_001798.1 + 11581 0.66 0.994125
Target:  5'- gUCUcGAUUCG-CUGGCCGAUCGcGUGg -3'
miRNA:   3'- -GGGuUUAAGUgGGCUGGCUAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 105405 0.66 0.994125
Target:  5'- cUCCAGGgcCGCCgCGGCCGcg-GUGCGc -3'
miRNA:   3'- -GGGUUUaaGUGG-GCUGGCuagCACGC- -5'
5302 5' -51.8 NC_001798.1 + 123466 0.66 0.993226
Target:  5'- aCCCGGG---GCCCGaaGCCGAccUCGUcGCGc -3'
miRNA:   3'- -GGGUUUaagUGGGC--UGGCU--AGCA-CGC- -5'
5302 5' -51.8 NC_001798.1 + 2127 0.66 0.993226
Target:  5'- gCCAGGUccUCGCCCGGCag--CG-GCGa -3'
miRNA:   3'- gGGUUUA--AGUGGGCUGgcuaGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 22539 0.66 0.993226
Target:  5'- gCCAGGaUCuACCCGAUCGGcgCGgagagGCGa -3'
miRNA:   3'- gGGUUUaAG-UGGGCUGGCUa-GCa----CGC- -5'
5302 5' -51.8 NC_001798.1 + 74017 0.66 0.993131
Target:  5'- cCCCAAcUUCcuggaguACCCGGCgGcgCGcgGCGg -3'
miRNA:   3'- -GGGUUuAAG-------UGGGCUGgCuaGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 72368 0.66 0.992221
Target:  5'- cCCCuGGUcCGCCagcuggagGACgCGAUCGUGCu -3'
miRNA:   3'- -GGGuUUAaGUGGg-------CUG-GCUAGCACGc -5'
5302 5' -51.8 NC_001798.1 + 71869 0.66 0.992221
Target:  5'- cCCCucGGUUCACCUGGCCG--CG-GCc -3'
miRNA:   3'- -GGGu-UUAAGUGGGCUGGCuaGCaCGc -5'
5302 5' -51.8 NC_001798.1 + 3995 0.66 0.991898
Target:  5'- gCCGGGgcCGCCCGGCCGugaagcggcccguggCGUcGCGg -3'
miRNA:   3'- gGGUUUaaGUGGGCUGGCua-------------GCA-CGC- -5'
5302 5' -51.8 NC_001798.1 + 14106 0.66 0.991101
Target:  5'- cCCCGGg--CACCCGACacacaAUCGggGCGa -3'
miRNA:   3'- -GGGUUuaaGUGGGCUGgc---UAGCa-CGC- -5'
5302 5' -51.8 NC_001798.1 + 56382 0.66 0.991101
Target:  5'- gCCCGGA-UCACCUG-CCGcUCG-GUGg -3'
miRNA:   3'- -GGGUUUaAGUGGGCuGGCuAGCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 48366 0.66 0.991101
Target:  5'- gCCCGGGgcCGCCCcGCgGggCGUGCc -3'
miRNA:   3'- -GGGUUUaaGUGGGcUGgCuaGCACGc -5'
5302 5' -51.8 NC_001798.1 + 79182 0.66 0.991101
Target:  5'- gCCCugug-CGCCCGGCUgcgggaugaGGUgGUGCGc -3'
miRNA:   3'- -GGGuuuaaGUGGGCUGG---------CUAgCACGC- -5'
5302 5' -51.8 NC_001798.1 + 31131 0.66 0.989857
Target:  5'- cCCCGAAgagCGcCCCGGCgCGGgggCG-GCGg -3'
miRNA:   3'- -GGGUUUaa-GU-GGGCUG-GCUa--GCaCGC- -5'
5302 5' -51.8 NC_001798.1 + 80866 0.66 0.989857
Target:  5'- aCCGAucUCaACCCGAUCGAaaacgCGUGUc -3'
miRNA:   3'- gGGUUuaAG-UGGGCUGGCUa----GCACGc -5'
5302 5' -51.8 NC_001798.1 + 144895 0.66 0.989857
Target:  5'- aCCAGAUaCGCCCu-CUGggCGUGCc -3'
miRNA:   3'- gGGUUUAaGUGGGcuGGCuaGCACGc -5'
5302 5' -51.8 NC_001798.1 + 128901 0.66 0.989726
Target:  5'- uUCCGGgcGUUCAUCCGGuccauccccaaccCCGG-CGUGCGc -3'
miRNA:   3'- -GGGUU--UAAGUGGGCU-------------GGCUaGCACGC- -5'
5302 5' -51.8 NC_001798.1 + 82344 0.66 0.988482
Target:  5'- cCCCAG--UCACCCGcgaccaaacccGCCGcgCGgacGCGc -3'
miRNA:   3'- -GGGUUuaAGUGGGC-----------UGGCuaGCa--CGC- -5'
5302 5' -51.8 NC_001798.1 + 15971 0.66 0.988482
Target:  5'- cCCCGAcgUCuuCCG-UgGGUCGUGCc -3'
miRNA:   3'- -GGGUUuaAGugGGCuGgCUAGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.