miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 3' -54.7 NC_001798.1 + 39907 0.66 0.949308
Target:  5'- gGGACcuuuGGGAACGCCgcgucgauggCCUCCGCc--- -3'
miRNA:   3'- aCCUGu---CUUUUGCGG----------GGAGGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 106815 0.66 0.949308
Target:  5'- gGGugGGGAAGaccaCCaCCUCCGCGcAGc -3'
miRNA:   3'- aCCugUCUUUUgc--GG-GGAGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 91822 0.66 0.949308
Target:  5'- gUGGGCGGGGcccgacgcCGCCCCUCCcaGCa--- -3'
miRNA:   3'- -ACCUGUCUUuu------GCGGGGAGG--CGcauc -5'
5303 3' -54.7 NC_001798.1 + 66902 0.66 0.949308
Target:  5'- gGGGCGGGGccguCGCUCCaUCUGCGa-- -3'
miRNA:   3'- aCCUGUCUUuu--GCGGGG-AGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 64092 0.66 0.949308
Target:  5'- gGGGCAcaccggaaucGggGcCGCCCCggcccccgaCGCGUGGg -3'
miRNA:   3'- aCCUGU----------CuuUuGCGGGGag-------GCGCAUC- -5'
5303 3' -54.7 NC_001798.1 + 43083 0.66 0.949308
Target:  5'- cGGGCuc-GGGCGCCgCCgCCGCGUc- -3'
miRNA:   3'- aCCUGucuUUUGCGG-GGaGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 29844 0.66 0.944956
Target:  5'- cGGugAGAGGGCGaCCC-CCGgGUc- -3'
miRNA:   3'- aCCugUCUUUUGCgGGGaGGCgCAuc -5'
5303 3' -54.7 NC_001798.1 + 25259 0.66 0.944956
Target:  5'- aGGGCGGcuGGCGCCgCCagCCGCcgGGg -3'
miRNA:   3'- aCCUGUCuuUUGCGG-GGa-GGCGcaUC- -5'
5303 3' -54.7 NC_001798.1 + 153875 0.66 0.944956
Target:  5'- gGGGCuGuu--CGCCCaCUCUGCGUc- -3'
miRNA:   3'- aCCUGuCuuuuGCGGG-GAGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 96169 0.66 0.944956
Target:  5'- aUGG-CGGcc-GCGCCCCcggCCGCGg-- -3'
miRNA:   3'- -ACCuGUCuuuUGCGGGGa--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 132159 0.66 0.944956
Target:  5'- cGGGCGGG--GCGCCCCcCC-CGg-- -3'
miRNA:   3'- aCCUGUCUuuUGCGGGGaGGcGCauc -5'
5303 3' -54.7 NC_001798.1 + 22862 0.66 0.944956
Target:  5'- cGGACcGu---CGCCCCgCCGCGcGGc -3'
miRNA:   3'- aCCUGuCuuuuGCGGGGaGGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 13700 0.66 0.940365
Target:  5'- cGGAgGucAAACGCCCCaugCCGUGa-- -3'
miRNA:   3'- aCCUgUcuUUUGCGGGGa--GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 66643 0.66 0.930462
Target:  5'- cGGcguccccCAGAAAccGCGCCaccgCCUCCGCGUu- -3'
miRNA:   3'- aCCu------GUCUUU--UGCGG----GGAGGCGCAuc -5'
5303 3' -54.7 NC_001798.1 + 131548 0.66 0.930462
Target:  5'- cGGACGc-GAGCGCCCCgacggCCcgguGCGUAa -3'
miRNA:   3'- aCCUGUcuUUUGCGGGGa----GG----CGCAUc -5'
5303 3' -54.7 NC_001798.1 + 31810 0.66 0.930462
Target:  5'- cGGAgGGAGGACccgggGUCCC-CCGCGg-- -3'
miRNA:   3'- aCCUgUCUUUUG-----CGGGGaGGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 153644 0.67 0.925148
Target:  5'- cGGAgGGGAGGCGUaCCUUcCCGCGcGGc -3'
miRNA:   3'- aCCUgUCUUUUGCG-GGGA-GGCGCaUC- -5'
5303 3' -54.7 NC_001798.1 + 103570 0.67 0.925148
Target:  5'- cGGGCAG-AGGCGCCUCcaaCCGCu--- -3'
miRNA:   3'- aCCUGUCuUUUGCGGGGa--GGCGcauc -5'
5303 3' -54.7 NC_001798.1 + 28195 0.67 0.925148
Target:  5'- aGGGCGGGgggaaggcgccGGAgGCCCCgcacgCCGCGc-- -3'
miRNA:   3'- aCCUGUCU-----------UUUgCGGGGa----GGCGCauc -5'
5303 3' -54.7 NC_001798.1 + 24487 0.67 0.924603
Target:  5'- gGGGCGccuGAGCGCCgcgcccgCCUCCGCGc-- -3'
miRNA:   3'- aCCUGUcu-UUUGCGG-------GGAGGCGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.