miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5303 5' -58.1 NC_001798.1 + 134337 0.66 0.866626
Target:  5'- gGGUCugGUCGUgagggUCGaaaGGGCGUCGUgGg -3'
miRNA:   3'- -CCGGugCAGUA-----GGC---CCCGCAGUAgCa -5'
5303 5' -58.1 NC_001798.1 + 66849 0.66 0.866626
Target:  5'- aGGCCGgGguuUCCGGGGaGUCGcCGg -3'
miRNA:   3'- -CCGGUgCaguAGGCCCCgCAGUaGCa -5'
5303 5' -58.1 NC_001798.1 + 53152 0.66 0.866626
Target:  5'- cGGCCAaccUCAUCCGcggcgccaacgcGGGCGUCccCGa -3'
miRNA:   3'- -CCGGUgc-AGUAGGC------------CCCGCAGuaGCa -5'
5303 5' -58.1 NC_001798.1 + 54588 0.66 0.86148
Target:  5'- cGGCCACGUauuacacgcauauggCCGGGGCGcccCcgCGc -3'
miRNA:   3'- -CCGGUGCAgua------------GGCCCCGCa--GuaGCa -5'
5303 5' -58.1 NC_001798.1 + 3378 0.66 0.859245
Target:  5'- cGCCGcCGUCGUCgGGGGUucgcgccccgGUCAgcgccgCGUu -3'
miRNA:   3'- cCGGU-GCAGUAGgCCCCG----------CAGUa-----GCA- -5'
5303 5' -58.1 NC_001798.1 + 43530 0.66 0.851668
Target:  5'- cGGCCGCGUCucccgCCaGGGCGguuUCc- -3'
miRNA:   3'- -CCGGUGCAGua---GGcCCCGCaguAGca -5'
5303 5' -58.1 NC_001798.1 + 31558 0.66 0.843903
Target:  5'- uGCCACaGUCGU-CGGGGCGcgCcgCGc -3'
miRNA:   3'- cCGGUG-CAGUAgGCCCCGCa-GuaGCa -5'
5303 5' -58.1 NC_001798.1 + 28672 0.66 0.843903
Target:  5'- cGCCGCGUggCGgcggCCGaGGCGgUCAUCGg -3'
miRNA:   3'- cCGGUGCA--GUa---GGCcCCGC-AGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 2525 0.66 0.843903
Target:  5'- cGGCgGCGUCGg-CGGGGCGgggggCG-CGg -3'
miRNA:   3'- -CCGgUGCAGUagGCCCCGCa----GUaGCa -5'
5303 5' -58.1 NC_001798.1 + 105281 0.66 0.843903
Target:  5'- cGGCCGCGgccgccgCGgucuccagcgccUCCaGGGCGUCggCGa -3'
miRNA:   3'- -CCGGUGCa------GU------------AGGcCCCGCAGuaGCa -5'
5303 5' -58.1 NC_001798.1 + 4439 0.66 0.839155
Target:  5'- uGGCCAUGggGUCCGGGuacgccccgcggaccGCGgaCGUCGUc -3'
miRNA:   3'- -CCGGUGCagUAGGCCC---------------CGCa-GUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 65072 0.66 0.835955
Target:  5'- uGCCGCGggugCA-CUGGGGCGUgGgUUGUa -3'
miRNA:   3'- cCGGUGCa---GUaGGCCCCGCAgU-AGCA- -5'
5303 5' -58.1 NC_001798.1 + 4881 0.66 0.82536
Target:  5'- cGGUC-CGUCGgcuggauccggagaUCCGGGGCcgccgGUCGUCu- -3'
miRNA:   3'- -CCGGuGCAGU--------------AGGCCCCG-----CAGUAGca -5'
5303 5' -58.1 NC_001798.1 + 86335 0.67 0.819538
Target:  5'- uGGCCAUGcgaCGcCUGaGGGCGUcCGUCGUc -3'
miRNA:   3'- -CCGGUGCa--GUaGGC-CCCGCA-GUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 91117 0.67 0.819538
Target:  5'- cGCUGC-UCcgCgGGGGCGUCcUCGUc -3'
miRNA:   3'- cCGGUGcAGuaGgCCCCGCAGuAGCA- -5'
5303 5' -58.1 NC_001798.1 + 43355 0.67 0.811084
Target:  5'- -cCCGCGUCGUccCCGGGG-GUUGUUGg -3'
miRNA:   3'- ccGGUGCAGUA--GGCCCCgCAGUAGCa -5'
5303 5' -58.1 NC_001798.1 + 116670 0.67 0.79372
Target:  5'- uGGCCAacacgGUCAagcgcauguUCCacaacGGGcGCGUCGUCGUc -3'
miRNA:   3'- -CCGGUg----CAGU---------AGG-----CCC-CGCAGUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 96677 0.67 0.790179
Target:  5'- cGGCCGCGcuggagcgCGUCCGGgaguuuaugguggcGGCGguggggucgggccUCAUCGUg -3'
miRNA:   3'- -CCGGUGCa-------GUAGGCC--------------CCGC-------------AGUAGCA- -5'
5303 5' -58.1 NC_001798.1 + 133292 0.67 0.788401
Target:  5'- uGGCCGCGugccugcagugggacUCGauggCCGGGGgGUCGgggCGa -3'
miRNA:   3'- -CCGGUGC---------------AGUa---GGCCCCgCAGUa--GCa -5'
5303 5' -58.1 NC_001798.1 + 17340 0.67 0.775804
Target:  5'- cGGCCAgGaCcUCgGGGGCGUUuguAUCGa -3'
miRNA:   3'- -CCGGUgCaGuAGgCCCCGCAG---UAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.