miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5304 5' -54.8 NC_001798.1 + 127397 0.66 0.948304
Target:  5'- aCCAGCUC--UCGCCGGacUUUGCCGuGGc -3'
miRNA:   3'- -GGUCGGGccAGUGGUCa-AAACGGU-CC- -5'
5304 5' -54.8 NC_001798.1 + 2621 0.66 0.948304
Target:  5'- gCC-GCCCGGcggCGCCcug---GCCGGGg -3'
miRNA:   3'- -GGuCGGGCCa--GUGGucaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 75642 0.66 0.948304
Target:  5'- gCUGGuCCUGGUCGCCAGggacgUUauUCGGGa -3'
miRNA:   3'- -GGUC-GGGCCAGUGGUCa----AAacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 2025 0.66 0.948304
Target:  5'- gCgGGCCCGcagaGCCGGUUgc-CCAGGg -3'
miRNA:   3'- -GgUCGGGCcag-UGGUCAAaacGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 15058 0.66 0.943931
Target:  5'- -gGGCCCGGggcgCGCgGGggguggUUUGUUGGGg -3'
miRNA:   3'- ggUCGGGCCa---GUGgUCa-----AAACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 70590 0.66 0.943931
Target:  5'- gCCGGUgCGcGUcCGCCAGUg-UGCCGuGGa -3'
miRNA:   3'- -GGUCGgGC-CA-GUGGUCAaaACGGU-CC- -5'
5304 5' -54.8 NC_001798.1 + 25997 0.66 0.939323
Target:  5'- gCUGGCcuCCGGcCGCguGUUcggGCCGGGg -3'
miRNA:   3'- -GGUCG--GGCCaGUGguCAAaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 123421 0.66 0.939323
Target:  5'- cCCcGCCgGGUCACCGGggc-GCCc-- -3'
miRNA:   3'- -GGuCGGgCCAGUGGUCaaaaCGGucc -5'
5304 5' -54.8 NC_001798.1 + 34872 0.66 0.938373
Target:  5'- uCC-GCCCGG-CGCCGGgcggcuacCCGGGa -3'
miRNA:   3'- -GGuCGGGCCaGUGGUCaaaac---GGUCC- -5'
5304 5' -54.8 NC_001798.1 + 99220 0.66 0.937413
Target:  5'- gCCGGCgaaGGUCGCCAcgcgcacgaGCCGGGg -3'
miRNA:   3'- -GGUCGgg-CCAGUGGUcaaaa----CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 45964 0.66 0.934478
Target:  5'- -aGGCCCGGaaugCGCCGuccucGUggaugUUGUCGGGg -3'
miRNA:   3'- ggUCGGGCCa---GUGGU-----CAa----AACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 135768 0.66 0.934478
Target:  5'- uCCGGCggCCGGcCGCCGGccc-GCCGGa -3'
miRNA:   3'- -GGUCG--GGCCaGUGGUCaaaaCGGUCc -5'
5304 5' -54.8 NC_001798.1 + 147212 0.66 0.934478
Target:  5'- uCCGGCCCGGgcccCCGGcggaGCgCGGGg -3'
miRNA:   3'- -GGUCGGGCCagu-GGUCaaaaCG-GUCC- -5'
5304 5' -54.8 NC_001798.1 + 108113 0.67 0.931457
Target:  5'- cCCGGUCUguggguggugaugggGGUC-CUGGUgggcgUUGCCGGGg -3'
miRNA:   3'- -GGUCGGG---------------CCAGuGGUCAa----AACGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 148083 0.67 0.929395
Target:  5'- aCGGgCCGGggGCCGGggccGCUAGGg -3'
miRNA:   3'- gGUCgGGCCagUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 86444 0.67 0.929395
Target:  5'- gCAGCCCGGggACgGGg---GCCGGu -3'
miRNA:   3'- gGUCGGGCCagUGgUCaaaaCGGUCc -5'
5304 5' -54.8 NC_001798.1 + 139418 0.67 0.929395
Target:  5'- gCAGCCCGGg-GCCAGacccgccgUGCgguuCAGGg -3'
miRNA:   3'- gGUCGGGCCagUGGUCaaa-----ACG----GUCC- -5'
5304 5' -54.8 NC_001798.1 + 34838 0.67 0.929395
Target:  5'- -gGGCCCGG--GCCGGacc-GCCGGGc -3'
miRNA:   3'- ggUCGGGCCagUGGUCaaaaCGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 41371 0.67 0.924074
Target:  5'- gCGGCUCauGG-CGCCGGggaugGCCGGGa -3'
miRNA:   3'- gGUCGGG--CCaGUGGUCaaaa-CGGUCC- -5'
5304 5' -54.8 NC_001798.1 + 111215 0.67 0.924074
Target:  5'- cUCGGCCaCGGUC-CCGGcc--GCCAGc -3'
miRNA:   3'- -GGUCGG-GCCAGuGGUCaaaaCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.